Lepisosteus oculatus (spotted gar): 102692573
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Entry
102692573 CDS
T07349
Symbol
rbm39
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
loc03041
]
102692573 (rbm39)
Spliceosome [BR:
loc03041
]
Common components
Common spliceosomal components
General mRNP proteins
102692573 (rbm39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
PRP38_assoc
RBD_DEAH11
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
102692573
NCBI-ProteinID:
XP_015220548
Ensembl:
ENSLOCG00000006562
LinkDB
All DBs
Position
LG18:complement(13131391..13142403)
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AA seq
537 aa
AA seq
DB search
MADDFDIEAMLEAPYKKDENKPSNANGHEERSKKKKKSKSKSRSRSRDRKRSKSRDRKKS
HDRKRSRSRDKKRSRSRDRRRSRSRSKERSGRYRARRSPFSGPKFNGGSRGKIGPPPAIK
LSRKRSRSRSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKV
RDVRMISDRNSRRSKGIAYIEFVEANSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAMA
NNLQKGNAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFS
DAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDSDELERTGIDLGTTGRLQL
MARLAEGTGLQIPPAAQQALQMSGSISFGAMAAVTDLQARLTQPPEAAATPALNLNLNTA
LNLPTQPLATHCFQLSNMFNPQSEDEPGWDVEIQDDVIEECNKHGGVVHIYVDKNSPQGN
VYVKCPTIPAAMAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSVMATQLLMPSRR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatttcgatattgaggctatgcttgaggctccttataaaaaggatgagaac
aagcccagtaatgcgaatggccacgaggagcgcagtaagaagaaaaagaagagcaagagc
aagagtcgcagtagaagccgcgaccggaagaggagcaaaagccgggaccgcaagaaaagc
cacgacaggaagaggagccggagccgcgacaagaagcgcagccgcagccgggaccgccgc
cgcagccggtctcgtagcaaagagaggagcggccgctacagagcgcggaggagccccttt
tctgggccgaaatttaacggtggttccagagggaagattggcccaccacctgccatcaaa
ctaagcaggaaacgctccagaagtagaagccctttcaggaaagacaaaagcccggtcaga
gagcctattgataacctaacgcctgaggaaagagatgcccgcacagttttctgcatgcag
cttgctgccagaattcgaccacgggaccttgaagagtttttctctgctgtaggaaaagta
agagatgtgagaatgatttctgacagaaactcgaggagatcaaaggggatcgcttacatc
gagtttgtagaagcaaactctgtgccactggcaatcggtctgacaggacagaggcttctg
ggagtgccaatcattgtgcaggcttcacaggctgagaagaacagggctgctgccatggcc
aataacttgcagaaaggcaatgctggtccgatgaggttgtacgtaggatctttgcatttc
aatatcacagaggacatgctccgggggatcttcgagccttttggaaggattgagagtatt
cagctgatgatggatagtgaaactgggcgatccaaaggatatggcttcattacattttca
gatgctgaatgtgccaaaaaggcattggaacaattgaatggatttgaactggctggtagg
ccaatgaaagtaggacatgtgactgagcgcactgatgcatccacagccagctcgttcctg
gacagtgacgagctggaaaggactgggatagatctcggtacaacgggccgactgcagctg
atggccaggcttgctgaaggtactggattacagatccctccagcagctcagcaggctctg
caaatgagtggctcaatctcatttggcgcaatggcagctgttacagatttacaagcaagg
ctgactcaaccgcccgaagctgctgccacccctgccttgaatttaaacctcaatacagct
ttgaatttaccgacacaaccactggcaacacattgcttccagctgtccaacatgttcaat
cctcaatctgaagatgaacccggctgggatgtagaaatccaagatgatgttattgaagaa
tgcaacaagcacggaggggttgttcacatttacgtggacaagaattcaccacaaggcaat
gtgtatgtgaaatgtccaactataccggctgcaatggctgctgttaatgctttgcatgga
agatggtttgcaggtaaaatgatcaccgcagcgtatgttccactcccgacataccacaac
cttttccctgactccgtaatggcaacgcagctgttgatgccttctcggcggtga
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