Lepisosteus oculatus (spotted gar): 102693355
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Entry
102693355 CDS
T07349
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04382
Cornified envelope formation
loc04510
Focal adhesion
loc04512
ECM-receptor interaction
loc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102693355 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102693355 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102693355 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102693355 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
loc04147
]
102693355 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
loc00536
]
102693355 (col4a6)
Exosome [BR:
loc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102693355 (col4a6)
Glycosaminoglycan binding proteins [BR:
loc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102693355 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102693355
NCBI-ProteinID:
XP_015206911
Ensembl:
ENSLOCG00000014335
LinkDB
All DBs
Position
LG7:complement(37323981..37467365)
Genome browser
AA seq
1713 aa
AA seq
DB search
MIAALLPVFCSTDQKMKYLSFFILVTVLAADLVHGGSKFQGPCAGRDCSRGCQCLPEKGS
RGQPGPLGPLGPNGPPGFPGSLGPQGPKGEGGHPGPRGPAGLKGDKGPMGVPGFSGSDGV
PGHPGQDGSRGLPGPDGCNGTIGDPGPRAPDGFPGTPGLPGPVGPKGQKGEPVFSGGSKG
SRGFPGLPGLVGPVGPRGQRGEGGPTGPRGLTGKQGRPGPPGLPGPKGSSSLGFQGERGE
KGDGGQPGPPGQQGPDALDGPPISTIFKGDKGEPGFVGILGLPGMPGPPGYFGYRGEKGE
KGIPGMPGARGYPGLNGPRGSYGDRGSAGIPGYPGTPGFPGQKGERGDIGFPGPTTVING
GGQGPPGDPGPEGQPGLPGDEGPLGPPGPPGFPGSPAFRPGQPGRPGFPGTPGLQGEKGS
PGEVSFGQPGAQGNPGFPGPAGPPGPPGETIQNADLNGRIGNPGLPGQQGPPGSRGSKGI
KGNLGDCQCLGGDDFSNPGPPGPQGLPGPAGLLGRKGAGGDPGPLGFPGPPGPRGTPGER
GFFGRKGEKGEPYFPNGIGVKGEPGVVGPSGPSGEPGRPGRDGLPGYPGRPGPPGDGGIG
VPGEKGFPGSPGLKGRQGDVGSPGIGYPGAVGNQGLPGVPGIDGLPGQPGLPGPPGDCCC
GQEVGNGLSLTEGGTTLPCMLPRDDGDPGPPGFRGIQGPKGESGNPGSVGRPGFDGQKGE
RGDPGFGGQPGPQGFTGPRGDQGPPGMPGQDGRPGLPGKDGIPGLRGEKGKPGEVFGAQP
GSPGLPGLPGAPGDKGQIGNPGLPGSPGFDGRIGIPGAKGERGADGFPGTQGLPGLPGEG
GLGGIPGPPGPEGSKGFTGPTGCQGFPGLKGFAGDPGPPGPAGMKGLPGQPGFPGLPGQK
GFPGPPGSSGQDGFPGLPGRRGEKGVPGMLGFPGMPGSPGASGTPGQKGPRGVDGSKGLP
GQVGLLGQKGDRGDPGLPGRPSLPPVAGLLAKGDRGSSGPSGLMGFPGQQGDKGFPGRAG
LPGQPGLPGFPGTEKGAPGDLGLPGTPGSPGFPGSKGSPGIIGFPGVPGPRGVDGPSGIN
GFPGVPGGRGLKGDRGVSVSTPGIPGNKGQPGDPGIPGGRGTDGPSGGPGFPGNSGFNGQ
KGIPGERGRQGLPGTPGFLGTNGLPGLPGRRGPEGSPGTPGSPGRSGQKGLPGAPGLDGL
NGLPGPKGPPGTPGLSELGIPGPAGPSGPKGERGFSFSGTPGIPGKKGERGEQGAPGVVG
IPGAAGSRGGSIPSNFPGQPGDRGLPGLDGEQGFLGPPGPPGPAGPGTAQGDRGDQGFPG
PPGLPGQPGSLGFSGSPGIPGAPGFKGQRGDPGIAGTQGQKGFPGDPGSFGLKGLKGVRG
SPGPRGIPGLSTPPPDIRIPNGSPGFPGQQGISGELGPQGQPGIPGSQGLKGFLGSPGKP
GKSGQPGFPGVVGDPGPLGIPGAPGQLGLPGKQGPPGLPGTSSRSPSIGYTLVKHSQSDQ
VPLCPQGMVKLWDGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTMPFLYCNANELCYFASR
NDKSYWLSTTAPIPMMPVSDNQIPQYISRCSVCEAPSQAIAVHSQDITIPQCPQGWRSLW
IGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLSTVE
PGLQFVQAPLSETLKAGQLRTRVSRCQVCMKNL
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgatagctgcgctgcttcccgtattctgctcgacagaccagaaaatgaagtacttgtct
tttttcatacttgtcacagtcctggcggcagatttggtccacggggggtcgaagttccag
ggcccatgtgcaggccgagactgcagccgtgggtgtcaatgcctgcctgagaaaggcagc
cggggtcaaccaggacccctagggccactggggccaaatggacccccaggatttccaggt
agcctggggccacaaggaccaaagggtgaggggggccacccaggaccacgagggcctgct
gggctgaaaggagacaagggaccaatgggtgtacctggtttctcaggaagtgacggagtt
ccaggacatccaggtcaggatggctcgagggggttgcctgggcctgatggctgcaatgga
acaatcggggatcctggcccaagagctccagatgggtttccaggaaccccaggactgcca
ggtccggttggtccaaaaggccaaaagggagagccagtcttttcaggaggaagcaaaggc
tcaagggggttccctggcctacctggactggttggaccagtcggtccacgaggtcaaaga
ggtgaaggaggacccactggtcctagaggtctgacaggcaaacagggtcgccctggtccc
cctggcctcccaggacccaaaggcagttcaagtcttggtttccagggagaaagaggagaa
aagggcgatgggggtcagcccggacccccaggccagcaaggaccagatgccctagacggg
ccacccataagcactatcttcaaaggagataagggtgaaccaggcttcgtgggcattctt
ggactacctggcatgcctgggcctccgggttactttggataccgcggagagaaaggagaa
aagggcatccccggaatgccgggagcgcggggctatccaggactgaatggacctcgggga
tcgtatggagacaggggttcagctggtattcctggataccctggaacaccaggatttcct
gggcaaaaaggggaacgaggagatattggctttccaggcccaaccaccgttattaatgga
gggggacaaggccctcccggagatccagggccagaaggccagccaggcctccctggagat
gaggggcctttgggacccccgggacccccaggatttccaggatcacctgcattcaggcca
ggtcaaccaggcaggccaggctttcctgggacaccaggattgcaaggggagaaggggagc
cctggagaggtcagctttggtcagccaggggctcagggaaaccctggctttccaggtcct
gctgggcctcctggacccccaggagaaacaatccaaaacgcagatttaaatggaagaatc
ggaaatccgggactgcctggacaacaggggcctccagggtctcgtggatccaaaggaatc
aaagggaatctgggagactgccagtgcttgggaggcgatgatttcagtaacccgggccct
cctggaccccaggggctgcctggtcctgcaggattactgggtcgaaagggggcaggtgga
gacccaggacccctaggttttccaggacctcctggcccacggggaactccgggtgaacgg
gggtttttcgggcggaaaggagagaaaggcgaaccctactttcctaatggcattggagtg
aaaggagaaccgggggtggtcggacccagtggcccatcaggggaaccaggacgaccaggc
agagatgggttgccaggataccccggacgtccaggaccccccggagatggaggaattggt
gttcctggagagaaagggtttccaggaagcccaggcctcaaaggtcgccaaggagatgta
ggttcccctggaatcgggtaccctggagctgtgggaaaccagggcttgcctggtgttcct
ggcattgacggacttcctggtcagcctggcctcccaggacctccaggtgactgttgctgt
gggcaggaggttggtaatggactctcactcacagagggagggacaacactgccttgtatg
cttcctagagatgacggtgacccaggaccaccaggatttcgtggaatccaaggtcctaag
ggagagtctggcaatcctgggtctgttggcaggcctggttttgatggtcagaagggtgaa
cgaggggacccaggatttggtggacaaccaggacctcaagggttcacagggcccaggggt
gaccagggccctccaggcatgccagggcaggatggcagaccagggcttcctgggaaggat
ggcattccagggctgcggggggagaagggaaagcctggagaggttttcggggctcagcct
ggatcccctggcctacctggcctgcctggagcaccaggggacaagggacagatcggaaac
ccaggcctccctggatcacctgggtttgatggccgtataggtatccctggtgccaaaggg
gaacgcggtgcggatggcttccccggaactcaaggtttgcctgggctgcctggagagggt
ggtctgggaggaatccctggccctcctggtcctgaagggagcaaaggatttaccggtcca
acaggctgccaaggctttccagggctgaaaggatttgctggtgaccctggcccccctggt
ccagcaggaatgaagggtctcccaggacagcctgggtttccaggcctgcctggacagaag
ggctttccggggccaccagggagcagtggacaagatggttttcctgggttgccaggcagg
agaggtgaaaagggagtaccaggcatgctgggcttcccaggcatgccggggtctccaggg
gcctccgggacccccggacaaaagggaccccgaggagtggatggcagtaaagggctgcct
ggacaagttggactgctaggacagaaaggagacagaggggatcctgggctgccaggccgg
ccttccttgcccccagtggcaggattgttggcaaagggtgacagaggaagcagtggcccc
agtgggctgatggggttcccggggcaacaaggtgataaaggttttccaggcagagctggt
ctcccaggtcagccaggcctgcctggcttccccggcacggagaagggagctccaggagat
cttggactacctggcactccagggtccccaggatttcccggttccaaaggctctcctggg
attattggtttcccaggcgtacctggacccaggggtgtcgatggtccatccggtattaat
ggattccctggagttcctgggggtcgaggcctgaaaggtgatcgtggagtctcagtgagc
actcctggaatcccaggaaataaaggtcagccaggagaccctggaatacctggggggaga
ggcactgatggcccatcaggtggacctggtttccctggaaactctgggttcaatggtcag
aagggcatccctggagagcgaggaaggcagggcctgccaggtaccccaggattcctgggc
accaatggtctgcctgggctgcccggtcggagggggcctgagggttcccctggtacccct
ggatcaccagggagatctggacagaaaggtttgcctggagctccgggcctggatgggctc
aacggtttgccgggccccaagggaccccctggaactccaggactgagcgagctggggatc
cctggccctgcaggaccttcaggccccaaaggagagagggggttttccttttctggcaca
ccgggtatacctgggaagaaaggagaaaggggcgagcaaggtgcccccggtgtggtgggc
atccccggtgctgccggttctcgcgggggctctatcccctccaacttccccggtcagcca
ggagaccgaggactgcccggattggatggggagcaaggcttcctcggcccccctggaccc
ccaggtcctgctggcccgggcaccgcacaaggagacagaggtgaccagggcttcccgggg
ccacctggcctacctggacaacctggcagtctcggcttctccggctctccaggaatccct
ggagcccccggattcaaaggtcagcgaggggacccaggcatcgctggaacccagggacag
aaagggttccctggggaccctggctcctttgggttgaaaggactgaagggagtgagaggt
tccccaggccctcgagggattcctggattgtcaactcctccacctgatataaggattccc
aatggatctcctggattcccggggcagcaagggataagtggggaattaggacctcaaggg
cagccaggcataccaggcagtcaaggtttgaaaggttttcttggctcccctggtaaacca
ggaaagagtgggcagcctggatttccaggagtagtgggagatcctggccctcttggcatt
cctggagcccctggacagctgggactcccagggaagcagggtcctcccgggctgccaggc
acctcatcgcgcagccccagcattgggtacaccctggtgaagcacagccagtccgaccag
gtgccgctctgtccacaggggatggtaaagttgtgggacggttatagcctgctctacgtg
gaaggacaagaaaaggctcacaaccaggacctaggactagctggctcctgcttgccccga
ttcagcaccatgcccttcctctactgcaacgccaacgagctctgctactttgccagccgc
aatgacaaatcctactggctctccaccaccgcccccattcccatgatgcccgtgtcggac
aaccagatccctcagtacatcagccgctgctcggtgtgcgaggccccatcccaggccata
gctgtgcacagccaggacatcaccatcccccagtgcccccagggctggcgcagcctgtgg
ataggctactccttcctcatgcacacagccgctggcgctgagggcggcggtcaatcccta
gtctccccgggttcctgtctggaagatttccgcgccacgcccttcatcgagtgcaacggc
gcccgcggcacctgccactacttcgccaacaagtacagcttctggctgagcaccgtggag
ccgggcctgcagttcgtgcaggcacccctttcagaaactctgaaggccgggcagctgcgg
actcgcgtcagccgctgtcaggtctgcatgaagaacttgtag
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integrated database retrieval system
