Lepisosteus oculatus (spotted gar): 102693386
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Entry
102693386 CDS
T07349
Symbol
rxra
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X2
KO
K08524
retinoid X receptor alpha
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03320
PPAR signaling pathway
loc04148
Efferocytosis
loc04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102693386 (rxra)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
102693386 (rxra)
03320 PPAR signaling pathway
102693386 (rxra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
loc03000
]
102693386 (rxra)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
loc03310
]
102693386 (rxra)
Transcription factors [BR:
loc03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
102693386 (rxra)
Nuclear receptors [BR:
loc03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
102693386 (rxra)
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Gene cluster
GFIT
Motif
Pfam:
Nuc_recep-AF1
Hormone_recep
zf-C4
Dppa2_A
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
102693386
NCBI-ProteinID:
XP_006640727
Ensembl:
ENSLOCG00000004579
UniProt:
W5MAT0
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Position
LG21:complement(9187906..9327090)
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AA seq
513 aa
AA seq
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METKPFLSLGFLKPPCSLAPVERGRQGDAISSPTVCSCFSGMCPLHQRRISTESPAQVNS
TSLSSPNSHRAMNTPTLHPSLMGSGISPSSLGSSGQLHSPISTLSSPMNGLGSPFSVISS
PMGPHSMSVPSTPGMGFGPSVSPQLNSPMNPVSSSEDIKPPLGLNGVMKVPAQPSGTPLS
LTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCIIDKRQRNRCQY
CRYQKCLAMGMKREAVQEERQRSKDRNENEVESTSSANEDMPVEKILDAELAVEPKTDTY
IETNLGMPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL
IASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGC
LRAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIG
LKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggagaccaaacctttcttgtcactgggattcctcaaacccccgtgctcactagcaccc
gttgagaggggcagacaaggagatgcaatcagttccccaacagtttgctcctgtttcagt
ggcatgtgccctctccaccagcgcaggatatctacagagtctcctgctcaagtgaactcc
acctctctgagctctccgaactctcaccgggcaatgaacacgcccaccctccatccgtcc
ctgatgggctcggggatcagcccatcatcgttgggttcgtcaggtcagctgcactctccc
atcagcactttgagctcgcctatgaatggcctgggctcccccttttccgtcatcagctcc
cccatgggcccccactccatgtccgtcccttccacccccggcatgggcttcggccccagc
gtcagcccccagctcaattcccccatgaaccctgtcagcagctcagaagatataaagcct
ccactgggattaaacggtgtgatgaaggtaccagctcagccctcaggcaccccactctct
cttaccaaacacatctgtgccatttgtggggacaggtcatctggtaaacattatggcgta
tacagctgtgaaggctgcaaaggcttcttcaagcggacagtgagaaaggacctcacctac
acttgccgcgacaacaaggactgtataattgacaagcgccagcgcaatcgctgccagtac
tgccgctaccagaagtgtttggccatgggcatgaagagagaagccgtccaggaggagagg
cagaggagcaaagatcgcaatgagaacgaagtggagtcgacgagcagtgccaatgaggac
atgcctgtggagaagatcctggacgctgagctcgcggtggagcctaagacagacacctac
atcgagacgaacctggggatgccctccaactcgcctaatgaccctgtcaccaacatttgc
caagcagcagataagcaactgttcacacttgtagagtgggcaaagagaatcccacacttc
tcggaactgccacttgacgaccaagtcattctcctacgagcagggtggaacgaactctta
attgcttcattctcacaccgttccatagcagttaaagatggaatccttctagcaactggc
ctccatgtccatcgcaacagcgcacacagtgcaggggtgggagccatctttgacagggtg
ctgacagaactagtatccaagatgcgagacatgcagatggacaagacagaactgggatgc
ctgagagccattgtcttgttcaacccagattccaaaggcctttcaaaccccagtgaagta
gaggctttgcgtgagaaagtttatgcctcactggaagcctactgtaaacagaagtaccca
gaacagcctggaaggtttgccaagcttttactgcgattacctgccctgcgttccatcggc
ctaaaatgtctggagcacctcttctttttcaagctaataggagacacgcccattgacacc
ttccttatggaaatgctggaagcaccacaccaaatgacctaa
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