Lepisosteus oculatus (spotted gar): 102693770
Help
Entry
102693770 CDS
T07349
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
loc01001
]
102693770 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
loc04054
]
102693770 (ciita)
Enzymes [BR:
loc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
102693770 (ciita)
Protein kinases [BR:
loc01001
]
Serine/threonine kinases: Other
TAF1 family
102693770 (ciita)
Pattern recognition receptors [BR:
loc04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
102693770 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
WHD_NOD2
NPHP3_N
LRR_14
NB-ARC
nSTAND_NTPase5
AAA_25
VapE-like_dom
ABC_tran
AAA_16
nSTAND3
Lant_dehydr_N
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
102693770
NCBI-ProteinID:
XP_015216080
Ensembl:
ENSLOCG00000006131
LinkDB
All DBs
Position
LG13:complement(11595901..11618399)
Genome browser
AA seq
1266 aa
AA seq
DB search
MIHFEDVLSKVRRTLGSASSGEIQGFLADLLKAEILSKDYYLCLSKEKDAEDLARRISLP
VWEKWNVCHSTIQSVLTKLPNRRTKGTTSSTSARTQGTAMETLVPAELELLHSDSLLPLE
ELYLSSDDSFPTDDDGNQLSLESSNLLGLLCSPFDAELECCYSPSSQPLEDRENIERILR
FLQDDQPEILTGETEMRATTPEATGLDTISQETKVKKTNCEKRDHNSTGIISDDSPKLKR
RRDPRHCRRTPKLNKRNKKCLEVTNSLPNKGISPPAVSTCSLMTLPAAQGVLQINSSPVP
QVLQFSIPANGSPTLIAHCTSSFVMNNAAVQVYPSFPQHIIATPHTSPVGSSVNSRGPTF
VLVPPVSLTSSQPQASPSSPAPGSVVGPESVNQTSVISSADSISTLSPASVSSPASTADT
GMSPHKGSTAPPLQSSQCSEMPKCVEDYIATAKAFMYDNCQLMAIENEVALDSLYIDVPL
VQRQIKTRTGKHVNKYQEKELLLFDMAERRKFEIKRSQLFEEAGQKPKELIALLGKAGMG
KSTFIQKLCLDWSKGDFQHFELVFFFETKKLNLPDQTYSLKNLLFDIFPAPPPRNVDEVF
RYILSNPQKVLIIFDGFDDFQDSEGLLQCPATSSTKDVYTIKQLFSGLFQKKLIVGSTIL
IAARPKEVLNQFLGKVDKIVELCGFSEEEIQLYTERYFKDTSCYDWAWTKVRNHNFLSAL
CFNPLICRFTCFLLENVGSKKSLPSTLTELYQQVFYQKLHMNTTKADPGKRQEKQNIPKL
GALAWRGVKDHSCLLSHEDLCSTGLKEFGLNSGILTPYILKRKGDEEEFGCGFTDLFVQN
FLGALHITAAKELNDKSLLTQTMLQQKKKKPQDDWLDVTRRFMVGLLFQKTQKHLDWLPG
STKKRLAKRNTIEAHLEKLRPSELSANRLLELCHCVYETGSTKLLRNLAQKLPEELSFSG
TPLTPPDVFVLKYLLKETKDNQKNFSIDIQETAIDLPGLRELVGLNCVTSFRASVADTIS
LWECLQQTGEKDLLKDAVAKFTVNPFKARQLSDVENLNQLVQIYRQKKLLLCDSADSETR
PDGDTFHVPAVNNLRKLEFALGPENGYLGFLRLVEVLPTLQWLQHLDLEGLTCNKIGDRG
AEKLAEILPCLSSLETLNLSQNCIGDQGAEKLAQTLPSLLSLRSLSLYSNSIADSGAESM
AQILPEMTSLTDLDVKFNKITDVGALKLSESLRRCPWIKSIAMWNHSIPHGVLEHLKQKD
SRINLL
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgattcactttgaggacgttctaagcaaagtgaggaggacacttggcagtgcttcctca
ggggagatccagggcttcctcgcagacctactgaaggcggagatcctttccaaggactac
tacctgtgtctctccaaggagaaggatgctgaggacctggccaggaggatatccctgccc
gtgtgggaaaaatggaatgtttgccacagcactatacagtctgtcctcaccaaactgccc
aaccgcaggacaaaggggacaaccagctccaccagtgccaggactcaggggacagccatg
gagactctggtgccggccgagctggagctgctgcactctgactccctcttgcctctggaa
gagctgtacctgtcttcagatgactctttccccacagatgacgatggcaatcagttgtct
ttggagtcttccaatctcctcggattgctgtgctcaccctttgacgctgagcttgagtgc
tgctactctccgagctcccagcccttggaagaccgagagaatattgagaggattctcagg
tttctgcaggatgaccaaccagagattttgacaggtgaaactgagatgagagcgacaacg
ccagaagctacaggtttggacacaataagccaggaaacaaaagtaaaaaagacaaactgt
gaaaagagagatcacaattctactggaatcatttctgacgattcacccaagctaaaacgt
agaagagatcccagacactgtcggaggacaccgaaactgaacaagagaaataaaaaatgt
cttgaagtcacaaacagtctgccaaataaaggtatcagtcctccagcagtgagcacctgt
agcttaatgaccttgccggctgctcagggagtcttgcagataaattcaagcccagttcct
caggttctgcagttttctatccctgcaaatggaagtccaacacttattgcacactgcact
agcagctttgtgatgaacaatgctgcagtccaggtttacccttctttcccacaacacata
atcgccacaccgcacacctctcctgtaggcagctctgtcaattcaagaggacccaccttt
gtgctagtgcctcctgtgtcactcacttcatctcagcctcaggcttctccgagctcccca
gctccagggtcagttgtgggcccagagagtgtgaaccagacctctgttatctcctctgct
gattccataagcactctttctccagcatcagtctcctccccggcttctacagcagatact
ggaatgtcaccccacaaaggatcaacagctcctccccttcagtcttctcagtgttctgaa
atgcccaagtgtgttgaagactatattgcaacagcaaaggccttcatgtatgacaactgc
cagttaatggccattgagaatgaagtagctctggactccctttacattgatgtgcctttg
gtgcagagacagattaagaccagaacaggaaagcacgtcaacaaataccaggaaaaggaa
ctcctactttttgacatggcagagagaaggaaatttgaaataaagagaagccagttgttt
gaggaagcaggacagaaaccaaaagagttgattgctttgctagggaaagctggaatgggc
aagagcaccttcatccagaagctgtgcctggactggtcaaagggagacttccagcacttt
gagctggtcttcttttttgagaccaagaagttgaatctgccggaccaaacatacagcctg
aagaacctgctgttcgatatctttcctgcgccacctcccagaaatgtcgacgaagtcttc
agatacatactctccaacccacagaaagttctgatcatatttgatggatttgacgatttt
caggactctgaaggtcttttacaatgccctgctaccagttccacaaaagatgtttacacc
attaagcagttgttttcaggtctgttccagaagaagctgattgttggcagcacaatatta
attgctgccaggcctaaagaagttttgaaccagtttttaggcaaagtagataaaatcgtt
gagttatgtggtttctcagaagaggaaatacaactttacacagagaggtattttaaggat
acttcatgctacgactgggcttggacaaaagtaaggaaccacaactttctctctgctttg
tgttttaaccctttaatatgcaggtttacatgcttccttcttgaaaatgtaggtagcaag
aaaagcttaccatcaacgcttacagaactgtaccagcaggtgttttatcagaaattgcac
atgaatacaaccaaagcagatcctggtaagaggcaggagaaacagaatattccaaagctc
ggggcgctggcgtggagaggagtgaaagaccacagctgtctcctgagccacgaagatttg
tgctccacggggctgaaggagtttggcttgaacagtgggattcttacaccatatattttg
aagaggaagggagatgaagaagagtttggctgtggatttacagatttgtttgtgcaaaat
ttcttgggagctctgcatatcactgcagccaaagaactcaatgataagagccttttgaca
cagaccatgctccagcaaaagaagaagaagccccaggatgactggctggatgtcacacgg
aggtttatggtggggctgctgttccagaagacacagaaacatttggattggcttcctggc
agcaccaagaagagactggcaaagcgaaacactattgaagcacacttggagaagctcagg
ccgtctgagctgagcgccaaccgcctcctggagctgtgtcactgcgtgtatgaaactgga
agcacgaaactcctgagaaacctggctcagaaactgcctgaagagctttcgtttagtggc
acccctctcaccccacctgacgtctttgttctaaagtacctcctgaaggaaaccaaagac
aaccagaagaatttttccattgacatacaggagacagccattgacctcccaggactgaga
gagctggtgggattaaactgtgtaacatctttcagggcttctgttgctgataccataagc
ctgtgggagtgtttgcagcagacaggggagaaagacctcttaaaagatgccgtggccaag
ttcactgttaaccctttcaaagccagacagctcagtgacgtagaaaacctgaaccagctt
gttcagatctacagacagaagaagctgcttttatgtgactctgctgattcagagacgagg
ccagatggggacaccttccatgttccggctgtgaataacctccggaagctggaatttgcg
ctgggcccagagaatggatatttggggtttctaaggcttgtggaggtcctgcccactcta
cagtggctgcagcacttagacctggaaggcttgacttgcaataaaataggagacagagga
gcagagaaactggctgagatcttgccgtgcttatcatcacttgagactcttaacctatcc
cagaactgcattggagatcaaggggctgagaaactggctcagactcttccctctcttcta
tcactacggagcctcagcttatacagtaattcaattgctgatagtggagcagaaagcatg
gcacagatacttccagagatgacgtccctcacagatctggatgtgaaatttaacaagatc
acagatgttggggcccttaagctaagtgaaagtctgaggaggtgtccatggattaaaagc
attgcaatgtggaatcattctatcccacacggagttctagaacatttaaaacaaaaggat
tctcggatcaacctgctctag
DBGET
integrated database retrieval system
