Lepisosteus oculatus (spotted gar): 102694071
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Entry
102694071 CDS
T07349
Symbol
skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102694071 (skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102694071 (skiv2l2)
03041 Spliceosome [BR:
loc03041
]
102694071 (skiv2l2)
03009 Ribosome biogenesis [BR:
loc03009
]
102694071 (skiv2l2)
03016 Transfer RNA biogenesis [BR:
loc03016
]
102694071 (skiv2l2)
Enzymes [BR:
loc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102694071 (skiv2l2)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102694071 (skiv2l2)
Spliceosome [BR:
loc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102694071 (skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
102694071 (skiv2l2)
Ribosome biogenesis [BR:
loc03009
]
Eukaryotic type
Pre-60S particles
Helicases
102694071 (skiv2l2)
Transfer RNA biogenesis [BR:
loc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102694071 (skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
102694071
NCBI-ProteinID:
XP_006627067
Ensembl:
ENSLOCG00000010186
LinkDB
All DBs
Position
LG2:37426233..37484023
Genome browser
AA seq
1030 aa
AA seq
DB search
MADTFGDELFSVFEEDQTSTKKRQNENIGSQPGKSAQGKDKTENSSAAKSKRELDNDGTD
EVIFGKKPKIETVSAEEINLADLMPKVRVEQVETVEGCTHEVALPANEEYTQLKPRVGKA
AKEYPFILDPFQREAILCLDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVVFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDSGDSGKWDPKGRKGGTKGPS
NVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTEEEKKLVEEVFNNAIDCLS
DEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINMP
ARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPTVGKQLL
KGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVDKMKKLEGLY
NEIEIPNEESVVTYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNDDNDFGWG
VVINFSKKSNVKANTGDLDPLYVVEVLVHCSKESVKNAATEAAKPAKPGEKGEMQVVPVM
LHLLASISSVRLYIPKDLRPFDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGIKDQGLKK
VIQKVEAFEHRMYSHPLHNDPNLDSVYKLCEKKAQIAGDLKAAKRELKKARTVLQMDELK
CRKRVLRRLGFSTSSDVIEMKGRVACEISSADELLLTEMIFNGLFNDLTSEQATALLSCF
VFQENANEMPKMTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEEMYLNSFRPHLMDVVYT
WANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKR
DIVFAASLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacctttggagatgagttgtttagcgtgtttgaggaggaccaaacaagcact
aagaagcggcaaaatgagaatattggatcacaaccagggaaatcggctcaggggaaggat
aaaacggaaaacagctctgctgctaagagcaagcgagagcttgataatgatggcacagat
gaagtaatctttgggaagaagccgaagatcgagactgtatctgcagaagaaataaatctt
gcagatcttatgcccaaagtaagggtggaacaggtggagactgtggaaggctgcacgcat
gaggttgctctaccagcaaatgaagagtacacccagctaaagccacgtgttggaaaagca
gcaaaggagtatccattcattctggaccctttccaaagggaagctattttatgcttggac
aacaaccagtccgtgctggtgtcagcccatacctctgcaggaaaaactgtatgtgcagag
tatgcaattgcattagctctgagggagaagcaacgagttatatttaccagccctattaaa
gccctaagcaaccagaaataccgggagatgtacgaggagttccaggatgtaggcttgatg
actggtgatgtcacaatcaatcccacagcttcatgccttgtcatgaccactgagatttta
agaagtatgttgtacagaggatcggaggttatgagggaagtagcgtgggttgtttttgat
gaaatccattacatgagagatgcagagcgtggtgtggtgtgggaagaaaccattattctc
ctcccagataatgtgcactatgttttcttgtctgctaccattccaaatgcacggcagttt
gctgagtggatctgccaccttcacaaacagccttgccacgttatctatacagactatcgg
cctactccactgcaacactatatctttccagcagggggagatggacttcacttagtggtg
gatgaaaatggagagttcagagaagataatttcaacacagcaatgcaagtgctcagagac
tctggtgacagcggcaaatgggatccaaaaggacgtaaaggagggacaaaaggaccatct
aatgttttcaagatagtgaagatgatcatggagcggaatttccagcctgtaatcattttc
agtttcagcaagaaggaatgcgaagcctatgcactgcaggtgtcaaagctcgacttcaat
acagaggaggagaagaagcttgttgaggaggtctttaataatgctattgattgtctctct
gatgaagacaagaaacttccacaagttgaacatgttttgcctcttctgaagagaggaatt
gggattcaccatgggggcctgcttcctattttgaaggagacaattgagattctcttctct
gaagggttgctcaaggcattgtttgccacagagacatttgccatgggcatcaacatgcca
gccaggacagtgctgttcacgagtgcccgcaagtttgatgggaaggatttccgctggata
acatcaggtgaatacattcagatgtctggtcgtgctggcaggcgaggcatggatgaacga
ggaattgtcatcttcatggttgatgaaaagatgagccctacagtgggaaaacagcttctc
aagggctctgctgatcctctcaacagtgctttccatctcacttataacatggtccttaac
ctgttgcgtgttgaagagatcaatccagagtacatgttggagaagtctttctaccagttt
cagcactacagagctgtcccaggggtcgtggataaaatgaagaaactggaaggactgtat
aatgagattgaaatccctaatgaagaaagtgtggttacctactacaaaattcgccaacag
ctggccaagcttggaaaggagattgaagagtacattcataaacccaagtactgcttgccc
tttctgcagcctgggagactggtcaaagtgaaaaatgatgacaatgattttggatggggg
gttgtcattaatttctcaaaaaaatcaaatgtaaaggccaacactggggacctggatcct
ctttatgtggtggaggtgctagtgcactgcagcaaagagagtgtcaagaatgctgcaaca
gaggctgccaaacctgccaagcctggagagaagggagaaatgcaggttgttcctgtgatg
ctccatcttcttgcatcaattagttcagtcaggctttacatccccaaagaccttagacca
tttgacaacagacaaagtgtcctcaaatccattcaggaagtgcaaaaacgttttcctgat
gggatacctcttctggatcccattgacgatatgggaatcaaggaccaggggctgaagaaa
gtaatccagaaagtagaagcctttgagcacaggatgtactcgcaccctctacataatgac
cctaacctggactccgtgtacaagctatgtgagaagaaagcacagattgctggagaccta
aaggcagcaaagagagagctgaagaaagccaggacagtgctgcagatggatgaacttaag
tgccgaaaacgagtccttaggcggctgggtttttcaacctcctctgatgtcattgagatg
aaaggacgcgttgcatgtgaaatcagcagtgcggacgaactcctgttgacagaaatgatt
tttaatggcctcttcaatgacctaacttctgaacaagcaacagctttgctcagctgtttt
gtgttccaggaaaatgccaatgaaatgcctaagatgacggagcagctggcaggacctctg
cggcagatgcaggaatgtgctaagcggatagccaaagtatcagcagaagccaagctggaa
gttgatgaagagatgtacctcaattctttccgcccccatttgatggatgtggtctatact
tgggccaacggatcaacatttgcccagatttgcaaaatgacagatgtttttgaaggcagc
attatccggtgtatgagacgtttggaggagctgctgagacaaatgtgtcaggccgcaaag
gccataggaaacactgagttggaaaacaagtttgcagaaggtatcacgaagatcaagaga
gacattgtgtttgctgccagtctttatttataa
DBGET
integrated database retrieval system
