Lepisosteus oculatus (spotted gar): 102694111
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Entry
102694111 CDS
T07349
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102694111 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
loc03041
]
102694111 (dhx8)
Enzymes [BR:
loc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102694111 (dhx8)
Spliceosome [BR:
loc03041
]
Complex C
Other components
Step II factors
102694111 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
T2SSE
PhoH
Sigma54_activ_2
TsaE
Flavi_DEAD
OB_RRP5_4th
Presenilin
Transformer
ABC_tran
Motif
Other DBs
NCBI-GeneID:
102694111
NCBI-ProteinID:
XP_006638183
Ensembl:
ENSLOCG00000012147
UniProt:
W5N2U1
LinkDB
All DBs
Position
LG15:complement(3346554..3361319)
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AA seq
1203 aa
AA seq
DB search
MVDVGEDELEKLEYLSLVSKVCTELDNHLGISDKDLAEFVINIAEKNPTFEGFRGALIKN
GAEFTDSLVSNLLRLIQTMRPPAKPSTSKASVVPVKQKTEKEKLKELFPALCRPDNPVIR
NMLDEDDVKVAADAMKELEAFMPSVSGTDTAKSSKQRSDESGRKKRRSRSRDRDRDRDRD
RRRRHRSRSRSRSRSPSRSRDRGKARSRRRSRSRTPSPSRERRDKDRAADRWKDKHVDRP
PPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQ
RVKVKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNMGCEGSEETTMRNPDRPTHLSLVS
APEVEDDSLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDL
EIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREMKQAQREAE
MDSIPMGLNKHWVDPLPDAEGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLS
ILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQ
PRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLG
QYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPIFTI
PGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERM
KSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDP
GFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNV
PEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLG
RRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQ
PEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCG
KATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLT
TKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAF
RRR
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atggtcgatgttggagaagacgagcttgaaaaactcgaatacctgtctttggtttccaaa
gtttgtacagagctggataaccatttaggtatcagcgacaaagatttagctgagtttgtg
atcaatatcgcagagaagaatcctacctttgagggcttcaggggagcattgataaaaaat
ggagctgaatttacagactcactggtcagtaatttattgaggctgattcagacaatgcga
ccaccagcaaagccatctacaagtaaagcttctgtggtgcctgtcaaacagaagacagag
aaggagaagctgaaggagttgtttcctgctctctgcaggccggacaaccctgttatcaga
aacatgcttgatgaggatgatgtgaaggttgcggctgatgccatgaaggagctggaagcg
tttatgcccagcgtcagtggcacagacacggctaagagcagcaagcagaggtctgatgaa
agcggcaggaagaagagacggagcaggagccgagatagggacagggatagggacagagac
cggcggcggcggcatcgctctcgttcccgatcccggtcccgatccccctcgcgctcccgg
gaccgagggaaggcgcgatcccgccgtcggtcccgcagccggacccccagccccagcaga
gagcgcagggacaaggacagggccgctgaccgctggaaggacaagcatgtggaccgtccc
cctccagaggagccttcggttggggacatctacaacggcaaagtcaccagcatcatgcag
tttgggtgcttcgtgcagctcgagggactgaggaaacggtgggaaggattagtccacatt
tctgagctcaggagagaagggagagtggccaatgttgcagatgttgtcagcaaaggtcag
agggtcaaggttaaggtgctgtcctttactggctctaaaaccagtctcagtatgaaggat
gtggaccaggagacaggggaggacctgaaccccaacagaagacggaacatggggtgtgag
ggcagtgaggagacgaccatgaggaaccctgaccggcccacacacctctccttggtcagc
gcgcccgaggtggaggatgactcgctcgagaggaagaggctcaccaagatctcggacccg
gagaagtgggagatcaagcagatgattgcagccaacgttctttcaaaagaggagttccca
gacttcgatgaagagacgggcattctccccaaagtagatgacgaagaagatgaggacctg
gaaattgagcttgtggaagaggagcctccattcctgagaggacacactaagcaaagcatg
gacatgagccctgtcaaaattgtcaagaaccctgatggctcgctgtctcaggctgctatg
atgcagagtgccctggccaaggagaggagggagatgaagcaggctcagcgtgaggctgag
atggactccatccctatgggactcaataagcactgggttgatcccctgcctgatgctgag
ggcaggcagattgctgccaacatgcggggtatcgggatgatgcccaatgatatccccgag
tggaagaagcatgcctttggggggaacaaggcctcctacggcaagaagacgcagctttcc
attttagagcagagagagagccttcccatatacaaactaaaggagcaactcattcaggct
gtccatgacaaccagatcctgattgtcattggcgagacgggctcagggaagaccacgcag
atcacccagtacctggcagaggccggctacacgacgcgagggaagatcggctgcacacag
cctcgccgtgtggctgctatgtccgtcgccaagcgagtatctgaggagtacggttgctgt
ctgggccaggaggtgggctacactattcgatttgaagactgcaccagccccgagaccgtc
attaagtacatgacggacggtatgcttcttcgagagtgtctgattgatccggacctggga
cagtatgccattatcatgctggatgaggctcacgagagaacgattcacactgatgtgctt
ttcgggctgctgaaaaagacagtgcagaagcgcacggacatgaaactgattgttacgtca
gccactctggatgcagtgaagttctcccagtatttctatgaagcacctattttcacaatc
cctggcaggacctaccccgtagaagtcctttacaccaaggagccagagacagactacctg
gatgccagcctcatcacagtcatgcagatccatctgactgagcctccaggtgatatcttg
gtgttccttactgggcaggaagagatcgacactgcctgcgagatcctatacgagaggatg
aagtctctggggcctgatgtcccagagctcatcattcttccagtctactctgctctgccc
agtgaaatgcagaccaggatttttgatcctgctcctcctggcagccgcaaagtggttatt
gccactaacattgcagagacctctctgactattgatgggatttactatgtggtggatcca
ggctttgtgaaacaaaaagtgtacaactcaaagactgggattgatcaactggtggtgacg
cccatttcacaggctcaggcgaaacagcgagcaggcagagctggcagaactggtcctgga
aaatgttaccgactgtatacagagcgtgcctacagagatgaaatgttaaccacaaatgtg
cctgagattcagaggaccaacttggccagcacggtgctgtctctgaaggcaatggggatc
aatgacctcctgtcttttgacttcatggacgcgcctccgatggagactctgatcacagcc
atggagcagctgtacaccctgggagctctggatgatgaggggctgctcacgcgattgggt
cgcaggatggccgagtttcctttggagcccatgctgtgtaagatgctcatcatgtctgtc
catttgggctgcagtgaagagatgctgaccatagtctctatgctctcagtgcagaatgtg
ttttatagaccaaaggacaagcaggcccttgcagaccagaagaaggccaagttccaccag
cctgagggagaccaccttaccctgctagctgtctacaactcctggaagaacaacaagttc
tccaacccctggtgctacgagaacttcatccaggcgcgctctctgcgcagagcccaggat
atccgcaaacaaatgctgggaatcatggataggcataagctggatgtggtgtcctgtgga
aaggcaaccgtgcgagtgcagaaggccatctgtagtggcttcttcagaaatgcagccaag
aaggatccccaggagggctaccggaccctcattgatcagcaggtggtctacattcaccct
tccagcgcgctcttcaacaggcagccagagtgggtggtgtaccacgagctcgtcttgacc
accaaggagtacatgagggaagtgaccactatcgacccacgctggctggtggagtttgcc
ccagccttcttcaaggtgtcggatcccaccaagctcagcaagcagaagaaacagcagcgg
ctcgagcccctgtacaaccgctacgaggagcccaatgcctggagaatctccagggccttc
cggcgccgctag
DBGET
integrated database retrieval system
