Lepisosteus oculatus (spotted gar): 102694416
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Entry
102694416 CDS
T07349
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
loc03041
]
102694416 (prpf39)
Spliceosome [BR:
loc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
102694416 (prpf39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_19
HrpB1_HrpK
TPR_15
Motif
Other DBs
NCBI-GeneID:
102694416
NCBI-ProteinID:
XP_015206064
Ensembl:
ENSLOCG00000011282
LinkDB
All DBs
Position
LG7:10115090..10124863
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AA seq
696 aa
AA seq
DB search
MEDSADQAEEPMTGMLDSAGEGSSPSVEQAAVEGCKPAASVSDPVPEAATQETAVQDGEQ
QEQEQQVLPSEESPGSPTNMELEDPSKETPDDGTVADDLAAIEVPFPAEYEKFWKVVEDN
PEDFTGWTYLLQHAEQENHIVAARKAFDAFFSRYPYCYGYWKKYADVERRQGNIKHTEEV
YRQGLQAIPLSVDLWLHYISFLKETLDSGDADTETRIRAAYEHAVLAAGTDFRSDRLWEA
YVNWETELGNLANVTAIYDRILGIPTQLYSHHFQRFKEHVLGNLPKHFLSEEEFIRLRRE
LATVNGIGGAEVPPSDDLPPGTEDLTDAAKRITEIENMRHRVIETRQEVFNHNEHEVSKR
WTFEEGIKRPYFHVKPLEKAQLNNWKEYLDFEIENGTPERVVVLFERCLIACALYEEFWI
KYAKYLENHSIEGVRHVYMKACTMHLPKKPMVHFLWAAFEEQQGNIEEARGILKALEEAA
PGLAMVRLRRVSLERRHGNLEEAETLLRDAIKNGKTANESSFYAIKLARQLFKVQKSLQK
ARKVLMEAIENDQSPKLYLNLLELEYSSDLKQNEEQILSVFDRALSSSLSIDTRITFSQR
KVEFLEDFGSDVNRLMLAYDEHQKLLTEQDSLKRKAENGSQEPESKRQRTDDSTVVTGQM
MAADMHTNHSAYNYNWYQYNYQTPWNYGQYYPPPPT
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaagattctgcagaccaagcagaggagccaatgacgggcatgctggactctgcgggg
gagggcagctcaccgagcgtggagcaggcagcagtggagggctgcaagcctgcggcttct
gtctccgaccctgttccggaagccgcgacacaagaaaccgccgttcaagacggagagcag
caggagcaggagcagcaagtcctgccgtcggaagaatcgccgggcagtccgaccaacatg
gagctggaggacccctcgaaagagaccccggacgatgggacggtggccgacgacttggcc
gccattgaggtgcctttcccagcagagtacgagaagttctggaaggtggtggaggataac
cctgaggacttcactgggtggacgtatcttctgcagcatgcagagcaagagaatcacatt
gtggcggcgcggaaggccttcgacgccttcttctcgcggtatccatattgctacggctac
tggaagaagtacgctgacgtggagaggcggcaggggaacataaagcacaccgaggaggtg
taccgacaaggcctgcaggccatccctctcagcgtggacctctggctgcactacattagc
ttcctgaaggaaacgctggactccggtgacgcagacacagagaccagaatccgagctgca
tatgaacatgcagtgctggcggcaggcacagatttccgctctgaccggctctgggaggcc
tatgttaattgggaaacggagctggggaacttggcaaatgttacggccatctacgatcgc
attctgggtattcccacccagttgtacagccatcattttcagagattcaaagagcatgtg
ctgggcaacctgcccaagcacttcctgtctgaggaggagttcatccgtctgcggcgtgag
ctggccacagtgaatgggattggtggggcggaggtaccaccaagtgatgatcttccacct
ggcacagaggaccttactgatgctgctaagcgtatcacagaaattgaaaacatgcggcac
cgagtcattgagacgcgtcaggaggtgtttaatcacaatgaacatgaggtcagcaagcgg
tggacctttgaggaagggattaagcggccatactttcatgtgaaacctctggagaaagct
cagctgaacaactggaaggagtacctggactttgagatcgaaaatggaaccccggagcgg
gttgttgtgctctttgagagatgcctgatagcctgtgccctgtatgaggaattctggatt
aagtatgccaagtatctggaaaaccacagcattgaaggtgtgaggcacgtctacatgaaa
gcatgcacaatgcatcttcccaagaagcccatggttcactttctctgggctgcttttgag
gagcagcaggggaacattgaagaggcacgggggatcctgaaggcgctggaggaggcggca
ccagggctggccatggtgcggctgcgcagggtcagcctggagcgccgccacggcaacctg
gaggaggcggagactctgctgcgcgatgccatcaagaacgggaagaccgccaacgagtcc
tctttttatgccatcaaactggcgcgccagcttttcaaggttcagaagagccttcagaag
gctaggaaagtgctgatggaagccatcgaaaatgaccagagtccaaagttgtacctcaac
ttgttggagctggaatacagcagtgacctcaaacagaatgaagagcagatcctgtcggtc
tttgacagagccttgagcagttcgctgtctatagacacgagaatcaccttctcccagcgc
aaagtagagtttctagaagactttggcagtgacgtcaaccggctcatgttggcatacgat
gaacatcaaaaacttctgacagaacaggattcgttgaagagaaaagctgaaaatggatca
caagaaccagagtcaaagaggcaacgtactgacgattctactgtggtcactgggcagatg
atggcagcagacatgcacaccaaccactctgcttacaactacaactggtaccagtacaac
tatcagacgccgtggaactatggacagtactaccctcctcctccaacgtga
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