Lepisosteus oculatus (spotted gar): 102694438
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Entry
102694438 CDS
T07349
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102694438 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loc03021
]
102694438 (taf5l)
03036 Chromosome and associated proteins [BR:
loc03036
]
102694438 (taf5l)
Transcription machinery [BR:
loc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
102694438 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
102694438 (taf5l)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
102694438 (taf5l)
STAGA complex
102694438 (taf5l)
TFTC complex
102694438 (taf5l)
SAGA complex
102694438 (taf5l)
SLIK complex
102694438 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
RMC1_N
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR19_1st
PROPPIN
PEP5_VPS11_N
WD_LRWD1
Ge1_WD40
Beta-prop_DCAF12
Nbas_N
Motif
Other DBs
NCBI-GeneID:
102694438
NCBI-ProteinID:
XP_006638518
LinkDB
All DBs
Position
LG16:1385419..1390555
Genome browser
AA seq
453 aa
AA seq
DB search
MKRVRAEQIQYTVAQYLKRRQYVDVESSLKGAKLSQTAEEMAANLTVQTESGCANVVSAA
PCQADPQQYELQFGQLHSFLSGKLNGLEPADVRAAILQNEAALESLQDCLKRVKEGPPSL
TTVCFYAFHHTEQLLNTAEISGDSKLLAAGFDSSCVKLWSLRARRLRAQPHVVDVSRVHL
ACDVLDEEADDEDSAGSEMKILRGHCGPVYRTAFLTDSSGLITCSEDTTIRYWDLGSFTN
TALYQGHAYPVWDVDISPCSLYFASSSHDRTARLWTFGRTYPLRLYAGHLADVDCVKFHP
NSSYLATGSTDKTVRLWSLQQGNSVRLFTGHRGPVLALAFSPNGKYLASAGEDQRLKLWD
LASGTLFKDLRGHTDTITSLSFSPDSSLVASSSMDNSVRVWDIRNAYCSAPADGSSSELV
GLYTGNTSNVLSVQFMACNLLLVTGTAQESQEH
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaagagggtgcgggcggagcagatccagtacaccgtggctcagtacctcaagcggcgg
cagtatgtggatgttgagagttccctgaagggcgccaagctctctcagactgcagaggag
atggcagctaacctcacagttcagacagagtctggctgtgccaacgttgtctcggcagct
ccttgtcaagctgaccctcagcagtatgaactgcagtttggccagctacacagctttctc
tctggtaagttgaatgggctggagccggccgacgtgcgggccgccatcctccagaacgag
gcggcgctggagtcgctgcaggactgcctcaagcgcgtgaaggaggggcccccctcgctc
accaccgtctgcttctacgccttccaccacaccgagcagctcctcaacacggccgagatc
tccggcgacagcaagctgctggccgccggcttcgactcgtcctgcgtgaagctgtggagc
ctgcgggcgcgccggctgagggcccagccccacgtggtggacgtgtcccgggtgcacctg
gcctgcgacgtcctggacgaggaggccgatgacgaggacagcgcgggcagcgagatgaag
atcctgcggggccactgcggcccggtgtaccgcacggccttcctgaccgacagctccggg
ctcatcacctgctccgaagacaccaccatccgctactgggacctgggcagcttcaccaac
accgccctctaccaggggcacgcctaccccgtgtgggacgtggacatcagcccctgcagc
ctgtacttcgccagcagctcccacgaccggactgcgcggctctggacgttcggccgcacc
tacccgctgcgcctgtacgccggccacctggcggacgtggactgcgtcaagttccacccc
aactccagctacctggccaccggctccaccgacaagactgtgcggctgtggagcttgcag
cagggcaactcggtccgcctcttcaccggccaccgcgggcccgtgctggcgctggccttt
tctcccaacggcaagtacctggcctccgccggggaggaccagcggttgaagctgtgggac
ctggcgtcgggcaccctcttcaaggacctgcggggccacaccgacaccatcaccagcctg
tccttcagccccgacagcagcctggtggcctcctcctccatggacaactcggtccgggtc
tgggacatccgcaacgcctactgcagcgcgccggccgatggctcctccagcgagctggtg
ggcttgtacacgggcaacaccagcaacgtgctgagcgtgcagttcatggcctgcaacctg
ctgctggtgaccggcacggcgcaggagagccaggagcattag
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integrated database retrieval system
