Lepisosteus oculatus (spotted gar): 102695229
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Entry
102695229 CDS
T07349
Symbol
gapvd1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
loc04131
]
102695229 (gapvd1)
Membrane trafficking [BR:
loc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
102695229 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
Motif
Other DBs
NCBI-GeneID:
102695229
NCBI-ProteinID:
XP_015222217
Ensembl:
ENSLOCG00000001381
LinkDB
All DBs
Position
LG21:complement(1067624..1131035)
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AA seq
1520 aa
AA seq
DB search
MGTREAGAWTTTTAPLSSPVLLVKMVKPDIHTLAHHLKQERLYVNSEKQLIQRLNAEVLK
TAEKLYRAAWIAKQQRINLDRFILTSAEASPAECCQHAKILEDTQFVDGYKTLGFQESIY
GEFLSRLRENPRLVASCLVTGEKLNQEHTQGVTHTVFTSLYGNCIMQEDEHYLLQVLRYL
IEFELKESDNPRRLLRRGTCVFSTLFKLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLE
TDPSKVTERFTPAQQERMFGDKGSEGYRRKVQEMVESNEAKLVALVNKFIGYLKQNTYCF
PHSLRWIVSQMYKTLSCVERLDLGEVRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEV
ARFNLMQVGRLLQQLAMAGTDEGDPRVKSSLSKFDKSCVAAFLDVVIGGRAVETPPMSSV
NLLEGLTRTVVYIAQGQLLALVDFVRNVMSGDQLREEERLALETLLANVPQSRPGKSNSL
ELTPSNTPQLSPATTPANKKNRLPIGQHLAAITCWDPSSANLSAHIPLVTPFAASRSRSR
SNIAQDQQGELEACSQDSLQEVMPEEVLVISLGTAPQTVPGMMSENEVLTLQMADGGQGE
VPVDDTKLHGKPDKTLRFSLCSDNLEGISEGPSNRSNSVSSLDLEGESVSELGAGPSGSN
GVEALQLLEHEQATTQDNLDDKLRKFEIRDMMGLTDDRDISETVSETWSTDVLGSDFDPN
VDEDRLQEIAGATVENMLGSLLCLPGSGSVLLDPCTGSTISETTSEAWSVEVLPSDSEAP
DLKQEERLQELESCSGVGSTSDDTEVREVGSRPSTPGLSAVSGISATSEDIPNKIEDLRS
ECSSDFGGKDSVTSPDGEESGHGAHHLTSPPSQVDSLLAMFDPLAMGDGSATSTVVRPKV
HYARPPHPPPDPPIPEAFATGQEPRLSMFVPHGLSQAELEQGKQRHSYPDRLVRSRSSDI
MCAARRPTSDPGLNRRPNLEERDLPGGVPAQGVFTMGHSSSPSKDSLKGEAEDRKDSDDE
KSDRNKPWWKKRFVPAIPKVLYWAAESEATGPMAFRKKDKQEKEDQGPDRVPLTEEPVSR
LTPQVQAAEDILDKYRNIKRMGPSEGVVSASYEGPEPCGEGESVHGPAREEALQNISADD
LPDSASQAAQPQDSKFSFSDAKKKLRMALCSADSVVFPILTHPTTRNGLPDHTDPEENEI
VCFLKVQLAEAINLQDKNQMAQIQETTRCVSRFDSRTCKKLLAAIAEDYRKRAPYIAYLT
RCRQGLQTSQAHLERLLQRVLRDKEVATRYFTTVCVRLLLERMESRMLNFINAFQACTAA
DDKTAAVEDFLRDLYGAMAHDAIWQYASEEQLQDAQMAIERSVMNRIFKLAFYPNQDGDT
LRDQVLQEHIQRLSKVVTANHKALQIPEVYLQEAPWPSAQAEIRTISAYKTPRDKVQCIL
RMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIKANPPCLLSTIQYISNFYASRLSGEEC
YWWMQFTAAVEFIKTIDDRK
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atggggacccgtgaggcaggagcatggactacaacgacagcgcccttgtcctctcctgtc
ctgctggtgaagatggttaagccagacatccacactctggcccatcacctcaagcaggag
cggctctacgtcaactcggagaagcagctcatccagaggctcaacgcggaggtgctcaag
acggccgagaagctgtaccgcgcggcctggatcgctaagcagcagaggatcaacttggac
cgattcatcctcaccagtgccgaggcctcgcccgcggagtgctgccagcatgccaagatc
ttggaggacacgcagtttgtggatggctacaaaaccctgggcttccaggagagcatctat
ggggagttcctcagccgcctgcgagagaacccgcggctcgtggcgtcttgcctggtgact
ggagagaagctaaaccaggagcacacccagggggtcacgcacacggtcttcacctccctg
tacggcaactgcatcatgcaggaagacgagcactacctgcttcaggtgctgcgctacctg
atcgagttcgagctgaaggagagcgacaacccccggcgcctgctgcgccgcggcacctgc
gtcttcagcaccctcttcaagctcttctccgagggcctgtactcggccaagctcttcctc
accgccaccctgcacgagcccatcatgcagctgctggtggaggacgaggaccacctggag
acggaccccagcaaggtgaccgagcgcttcacccccgcccagcaggagcggatgttcggc
gacaagggctccgagggctaccgccgcaaagtccaggagatggtggagtccaacgaggcc
aagctggtcgccctggtcaacaagttcatcggctacctgaagcagaacacctactgcttc
ccccacagcctgcgctggattgtgtcgcagatgtacaagacgctgtcgtgcgtggagagg
ctggacctgggcgaggtgcggaccatgtgcaccgacctcctgctcacctgcttcatctgc
ccggccatcgtcaaccccgagcagtacggcatcatctcggacgcccccatcaacgaggtg
gccaggttcaacctgatgcaggtggggcggctgctgcagcagttggccatggcgggcact
gatgagggggacccccgtgtgaagagcagcctgtccaagtttgataagagctgtgtcgct
gcattcctggatgtggtgattggtgggcgggcagtggagaccccgcccatgtcctctgtg
aacctattggaaggactaacgaggactgtagtgtacattgctcagggtcagctgctagca
ctggtggatttcgtgcggaacgtgatgtccggcgaccagctgcgcgaggaggagagactg
gccctggagactctgctggccaacgtcccgcagtcccggccgggcaagagcaacagcctg
gagctcaccccctccaacaccccccagctctcccccgccaccacccccgccaacaagaag
aaccggctgcccataggacaacacttagcagctattacctgctgggatccctcctccgcc
aacctgtctgcacacattcccttagtaacccctttcgctgcctcgcgaagccgcagcagg
tctaatatcgcgcaggaccagcagggggagctagaggcctgctcccaggactccctgcag
gaagtgatgccagaggaagtgctggtcatctccctgggcaccgcccctcagactgttccg
gggatgatgtcagagaatgaggtgttgacgctgcagatggcggatggtgggcagggagag
gttcctgtggacgacaccaagctgcacggcaagccggacaaaaccctgcgtttctccctc
tgcagcgacaacttggaggggatatccgaagggccctccaatcgctccaattcggtgtcc
tcgctggatctggagggcgagtcggtgtcggagctcggggccggaccgtcggggagcaat
ggagtggaggcgctgcagctcctggagcacgagcaagccacgacgcaggacaatctggac
gacaagttaaggaagtttgagatccgggatatgatggggctgacagacgaccgggacatt
tcggagacggttagcgagacctggagcaccgacgtgctgggaagtgatttcgatcccaac
gtggacgaggacaggctgcaggagatcgctggagcgactgtggagaacatgttgggtagc
cttctgtgtctgccgggctcagggtcggttctgctggacccgtgcaccggatctaccatc
tccgagacgaccagtgaggcctggagtgtggaggtgcttcccagcgactcggaggccccg
gacctgaagcaggaggagaggctgcaggagctggagagctgctcgggggtgggcagcacg
tccgacgacacggaggtccgggaggtgggctcgcggccgagcaccccagggctcagcgcc
gtctcaggtataagtgcaacgtcggaagatatcccgaataagattgaggatctgcgttcg
gagtgcagctcggacttcggagggaaggattctgtgaccagtccggatggagaggaatct
ggacacggagcacaccatctgacatcgccaccttctcaagtggactcgctgctggccatg
ttcgatcccctcgccatgggtgacggatctgcaacgtccacagtggtccgaccgaaggtg
cactatgcccggcccccacacccgcccccagacccccctatcccggaggcgtttgccaca
ggccaggagccccggctgtccatgttcgtgccacatgggctgtcgcaggctgagctggag
cagggcaagcagcgccactcgtacccggaccggctggtgcgcagccggagctctgacatc
atgtgcgccgcgcgccggcccaccagcgaccccgggctgaaccggcggcccaacctggag
gagagggacctgccggggggcgtcccggcccagggcgtcttcaccatggggcacagctcc
tcccccagcaaggactcgctgaagggagaggcggaggacagaaaagacagcgatgatgaa
aagtccgatcggaacaaaccctggtggaagaagcgctttgttcctgcaatccctaaagtg
ctgtactgggcggccgagagcgaagccacaggtccgatggcatttcgaaagaaggacaaa
caggagaaggaggatcagggtcctgaccgtgtccctcttacagaagagccggtgtccagg
ttaaccccgcaggtgcaagcagcagaagacatcctggacaagtacaggaacatcaagagg
atgggccccagcgagggcgtggtgtctgcatcctacgaaggccctgagccctgcggggaa
ggggagagtgtccacggacccgcgcgcgaggaggctctgcagaacatctccgcggacgac
ctgcccgactccgccagccaggccgcccagccacaggactccaaattctccttcagtgat
gccaagaagaagctgcggatggccctgtgctccgcggactccgttgtctttccgattctg
actcatcccaccaccaggaacgggctgccggaccacactgacccggaagagaacgagatt
gtctgcttcctgaaggtccagctggcagaagccatcaacctccaggacaagaaccagatg
gcccagatccaggagacgacgcgctgcgtgagtcgcttcgacagccgcacctgcaagaag
ctactggccgccatagctgaagactacaggaagagggctccgtacatcgcctacctgacg
cgctgccggcagggcctgcagacctcccaagcccacctggagcggctcctgcagagagtg
ctgagggacaaggaggtggccacccgctacttcaccaccgtctgcgtccggctgctgctc
gagaggatggagtccaggatgctcaacttcataaacgcgttccaggcctgtaccgccgcc
gacgacaagacggccgccgtggaggacttcctgcgggacctgtacggcgcgatggcccac
gatgccatctggcagtacgccagcgaggagcagctccaggacgcgcagatggccatcgag
cgcagcgtcatgaaccgcatcttcaagctggccttctaccccaaccaggacggggacacc
ctgcgcgaccaggtcttgcaggaacacatccagcgtctctccaaagtggtgacggccaat
cacaaagctctccaaatccccgaggtctacctgcaggaggccccctggccatcggcgcag
gccgagatccggacgatcagcgcctacaagaccccccgggacaaggtgcagtgcatcctg
cgcatgtgctccaccatcatgaacctgctgagcctggccaacgaggactctgtcccgggg
gccgacgactttgtgcccgtcctggtcttcgtcctgattaaggctaaccctccctgtctg
ctgtccaccatccagtacatcagtaatttctacgccagccggctgagtggggaggaatgc
tattggtggatgcagttcacggcagcagtggaattcatcaagaccatcgacgatcgcaag
tga
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