Lepisosteus oculatus (spotted gar): 102695936
Help
Entry
102695936 CDS
T07349
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102695936 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
loc03041
]
102695936 (sf3b1)
03036 Chromosome and associated proteins [BR:
loc03036
]
102695936 (sf3b1)
Spliceosome [BR:
loc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102695936 (sf3b1)
Complex B
102695936 (sf3b1)
Complex C
U2 SnRNP specific factors
102695936 (sf3b1)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
102695936 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
102695936
NCBI-ProteinID:
XP_006636349
Ensembl:
ENSLOCG00000003899
LinkDB
All DBs
Position
LG12:complement(6742154..6761542)
Genome browser
AA seq
1313 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKAALLEEGERGVGLDSTGYYDQEIYGGSDSRFTGYVTSI
AANEHEDDDEEDSSTSLLGQKKPGYHAPVALLNDIPQSAEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQARTYMDVMREQHLTKEEKEIRQQLAEKAKSG
DLKAVNGSAASQAAAKRKRRWDQTADQTPGSASTTPKKASSWDQADTASETPGHTPSQSR
WDETPGRARGSETPGATPSTRMWEPTPSHTPAGAATPGRGDTPGHATPGHGGASSSVRKN
RWDETPKTERETPGHGSGWAETPRTDRGGDSVGETPTPGASKRKSRWDETPASQMGSSTP
LLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPEG
YKVLPPPAGYVPIRTPARKLTATPTPIGGMTGFHMQTEDRSMKAVNDQPSGNLPFLKPDD
IQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPL
FNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARV
EGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAV
CKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAA
LAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVML
ILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYR
QLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQ
LIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQA
ADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTP
PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKK
AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPA
LMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAV
VQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCL
QGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRFELEYFL
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagacatcgaggcgcagatcctggagatccagggc
atgaaggcggccctgctggaggagggcgagaggggcgtgggcctggactccactggctac
tacgaccaggaaatctacggcggcagcgacagtcgcttcactggctacgtcacctccatc
gccgccaacgagcacgaggatgatgacgaggaagactcctccaccagcctgctgggacag
aagaagccggggtaccatgctcccgtggccctgctcaacgacatcccccagtctgcagaa
cagtatgacccctttgcggagcacaggccccagaagatcgccgagagggaggacgagtat
aaagctcgccgccgccagatgatcatttctcccgagcggctcgaccccttcgcagacgga
ggcaaaacgcccgaccccaagctgcaggcgcgaacctacatggacgtcatgagagagcag
cacctcacgaaggaggagaaagagatccgccagcagctggcagagaaagccaagtcgggg
gacctgaaagccgtgaacggctctgcggcgtctcaggctgccgccaagcgcaagcgccgc
tgggatcagacggctgaccagacgcccggcagcgccagcaccacgccgaagaaggcctcc
agctgggaccaagcggacaccgcttctgagactccagggcacactccgtctcagagccgc
tgggacgagacccccggccgggcccggggcagcgagactcctggcgccacgcccagcacg
cgcatgtgggagcccacgccaagccacacgcccgcgggagccgccacgccgggccgcgga
gacacgccagggcacgccacgccgggccacggaggggcctcctctagcgtgcgcaaaaac
cgctgggatgagacgccgaagaccgagagagagaccccgggccacggcagcggctgggct
gagaccccccgcaccgaccgagggggcgactccgtgggggagacgccaaccccgggggcc
agcaagaggaagtcgcgctgggatgagacgcctgccagccaaatgggctcctccacgccc
ctgctcaccccgggaaagacccccattgggacgcctgccatgaacatggccacccctaca
ccaggtcacttgatgagcatgacgccggaacagctgcaggcttggcgctgggagagggag
atcgacgagaggaacaggcccctcacggacgaggagctggacgccatgttcccagagggc
tacaaggtgctgccccccccggcggggtacgtcccgatccgaacgccagcccgcaagctg
accgccacgcccacgcccatcgggggcatgacgggcttccacatgcagaccgaggaccgc
agcatgaaggcggtcaacgaccagccgtccggaaacctgcccttcctcaagcccgacgac
atccagtacttcgacaagctgctggtggaggtagatgagtcaactctaagccccgaggag
cagaaagagcgaaagatcatgaagctcttgctgaagatcaaaaatggcacccctcccatg
agaaaggcagcgctacgtcagatcacagacaaggcacgggagtttggcgctgggcctctg
ttcaatcagatcctgcctttgctcatgtcccctacactggaggaccaggagcgccacctg
ctggttaaggtcattgacagaatcctatacaagctggatgacctggtcagaccttatgtg
cacaagatcctggtggtgattgagcccttgctgattgatgaagattactatgccagagtg
gagggcagggaaatcatctccaacttggcgaaggcagctgggctggcgacgatgatctcc
accatgcgccccgacatcgacaacatggacgagtacgtgagaaacaccacggcccgcgcc
ttcgccgtcgtggcctcggcgctcggcatcccctccctcctgcctttcctcaaggctgtc
tgcaagagcaagaagtcgtggcaggcgaggcacaccggcatcaagatcgtgcagcagatc
gccatcctcatgggctgtgccatcctgccccatctgcgcagcttggtggagatcattgag
cacggtctggtagacgagcagcagaaagtgcgcaccatcagcgccctggccatcgcggct
ctggctgaggccgccaccccctacggcatcgagtccttcgactccgtgctcaagcccctg
tggaagggcatccgacagcacagaggcaagggtctggctgctttcctgaaggctattgga
tacctcatccctctgatggatgccgagtacgccaattactacacccgtgaggtcatgctg
atcctcattcgagagttccagtcccccgacgaagagatgaaaaagattgtgctcaaggtg
gtgaagcagtgctgtggcacagatggtgtggaggctaactacatcaagacggagatcctg
ccccctttcttcaagcacttctggcagcataggatggccctggacaggcggaactacaga
cagctggtcgacacgacagtggagctggcgaacaaggtgggggccgcagagatcatctcg
cgcatcgtggacgacctgaaggatgaggcagagcagtaccgcaagatggtgatggagacc
atcgagaagatcatgggcaacctgggggccgccgacatcgaccacaagctggaggagcag
ctcatcgacggcatcctttacgccttccaggagcagaccactgaggactcggtgatgctg
aacgggtttggcacagtggtgaacgccctgggcaagagggtgaaaccatacctgcctcag
atctgcggtacggtcctctggcgactcaacaacaaatccgccaaagtccgccagcaggcc
gctgatctcatttcccgcacggctgtcgtcatgaagacctgccaagaggaaaagctgatg
ggtcatcttggtgtagtgctgtatgaatatctgggagaggagtacccagaagtcctggga
agcatcttgggagcactcaaggccattgtcaacgtcattggaatgcacaagatgacccct
cccatcaaagacctgctgccccgcctgacgcccatcctgaagaaccggcacgagaaggtg
caggaaaactgcatcgacctggtgggcaggattgcggacaggggagcggagtacgtgtcg
gccagggagtggatgaggatctgctttgagctgctggagctgctgaaggctcacaagaag
gccatccgccgagccactgtcaacaccttcggttacatcgccaaggctatcggcccccac
gacgtgctggccacgctgctgaacaacctgaaggtccaggagcggcagaaccgcgtgtgc
acgacggtggccatcgccatcgtggccgagacctgctcgcccttcacggtgctgccggcg
ctgatgaacgagtaccgcgtgcccgagctcaacgtgcagaacggcgtgctcaagtccctc
tccttcctgttcgagtacatcggcgagatgggcaaggactacatctatgccgtcaccccg
ctgttggaggacgcactgatggacagggacctggtgcacaggcagacggcgagcgccgtg
gtgcagcacatgtccctgggcgtctacggcttcggctgcgaggactccctcaaccacctg
ctcaactacgtctggcccaacgtgttcgagacctcgccgcacgtcatccaggccgtgatg
ggggcactggaggggctgcgcgtcgccatcggcccctgccgcatgctgcagtactgcctg
cagggtctgttccacccggccaggaaggtgcgggacgtctactggaagatctacaattcc
atctacatcggctctcaggatgcgctgatcgcgcactacccccgcatctacaacgacgag
aagaacacctacattcgcttcgagctcgagtacttcctgtag
DBGET
integrated database retrieval system
