Lepisosteus oculatus (spotted gar): 102696567
Help
Entry
102696567 CDS
T07349
Symbol
htt
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102696567 (htt)
04131 Membrane trafficking [BR:
loc04131
]
102696567 (htt)
03029 Mitochondrial biogenesis [BR:
loc03029
]
102696567 (htt)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
102696567 (htt)
Membrane trafficking [BR:
loc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
102696567 (htt)
Mitochondrial biogenesis [BR:
loc03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
102696567 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT_GCN1
HEAT_EF3_N
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
102696567
NCBI-ProteinID:
XP_015200328
Ensembl:
ENSLOCG00000010421
LinkDB
All DBs
Position
LG4:complement(38641890..38734321)
Genome browser
AA seq
3109 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPPSAEELVQKQKKDAATTKKDRVAHCLTICENIVAQSL
RNSPEFQKLLGIAMEMFLLCSDDGESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK
KNGASRSLRAALWRFAELSHLVRPQKCRPYLVNLLPCLTRISKRPEETVQETLAAAIPKI
MAALGHFANDGEIKVLLKAFIGNLKSSSPTIRRTAASSAVAICQHSRRTQYFYTWLLNVL
LGLLLPVDDEHPAPLILGVLLALRYLMPLLQQQVKDTSLKGSFGVTRKEAEISPTPEQLI
QVYELTLHYTQHRDHNVVTAALELLQQAFRTPPQDLLHALITAGSIPRVSISREEAENRG
RSSSILELIAGGSSSSPLLLRKQKGKLLSGEEEGLEDDTETRSEVSTGTFTASVTSDGTS
EVQSSSGMSTLGSAGGGHDIITEQPRSSQHNLQAADSVELSGAADPPSGPAAGQTAEEED
ALSRGSSQISSSGGADADPQASSPASDSSQTTTEGPDSAVTPSDCSELVLDGTESQYSGM
QIGTLQDEEEEGSGNPLEEPLQALTDATIALSKPHLMENMGHSRQPSDSSVDRFIPKDEV
VENAEPENKPSRIRGDIGHYTDPKAAPLVHCVRHLSALFLLTGEKNGLVPDREVRVSVKA
LAVSCVGAATALLPEAFFNRLYRQPLEGVLQEEQQYISDILNYTDHGDPQIRGATAILCG
TIIYSILNKTRFNIEPWLARVMSSTGNPISLVNCVPLLQKTLRDESSVTCKLACTAVRHC
IMALCSSTISELGLQLVVDLLALKDSSYWLVRTELLETLSEIDFRLISFLERRTETLHRG
DHHYTGVISFYFWLLQAIGLRGGKKYETRFLLCFRVVSRLFYDCDQGQADPVVAIARDQS
SVYLQLLMHETQPPSHFTVSTITRTYRGYRISQNASDITTENNLSRVVTAVSHALASSTS
RALTFGCCEALCLLSSAFPVCTWSTGWHCGYVSSSASQPFRSSLYKNRGRSFSLSHSNSE
DAKKNCTVGMANMVLSLLSSAWFPLDLSAHQDTLILAGNLIAATAPKCLKSPWSTEDETG
AGGTKQEEPWPALGDRTVVTMVEQLFSHLLKIINICAHVIDDVAPGPAVKATLPSLANTP
SLSPIRRKGKEKEPAEQAAAPMSPKKSSESNPAARPADTTGTNSINKSSTLGNFYHLPPY
LKLYDVLKATHANYKVTLDLQNTSEKFGGFLRAALDVLSQLLELATLQDIGKCVEEILGY
LKSCFSREPTMATVCVQQLLKTLFGTNLASQYDGSSSNPCKSQGKALRLGSSSLRPGLYH
YCFMAPYTHFTQALADASLRNMVQAEQEQDTSGWFDVMQKVSIQLRSSITNVTKHRADKN
AIHNHIRLFEPLVIKALKQYTTTTSVSLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVL
KQFEYIEVGQFRDSEAIVPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVT
HAIPALQPIVHDLFVLRGSNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCH
KENEDKWKRLSRQIADIILPMIAKQQMHLDSHEALGVLNTLFETVAPSSLRPVDMLLRSM
FVTPSTMSSVGTVQLWVSGILAVLRVLISQSTEDIVLSRVQELSLSPYLLSCPTIDKLQD
YSSHTPPSAGHTGEAQNKYPPEETFARFLLQLVGILLEEISSKQVKVDMSEQQHTFYCQQ
LGTLLMCLIHIFKSGMFRRITAAATKLLKGDGCEGSFYTLENVSSMVQSLITTHPSLVLL
WCQILLIINYTNYTWWSEVHQTPRRHSLSSTKLLSPHISGDDEEARPESRLAMCSREIVR
RGALILFCDYVCQNLHDSEHLTWLIVNHVKDLINLSHEPPVQDFISAIHRNSAASGLFIQ
AIQSRCENLSTPTMLKKTLQCLEGIHLSQSGAVLMLYVDKLINTPFRVLARMVDTLACRR
IEMLLAETLQNSIAQLPLEELDRIQEYLQSSSLAQRHQRLYSLLDRFRATVAEETASPSP
PITSHPLDGDLPPAPENVTADKEWYVALVRSQCCLRTDAALLESTELLTKLPQPDLSSIM
TSKEFNLNLLDPCLSLGAQKMSKEQGSVLFDSALQVTLDHLSSTVQLLPSHHQVFAASSA
PGDSAYWNKLSDVYSERVFYQTVVSLCRALSQYLLSLSKFPTVLLIPSEKEADITNFVVM
ALETVAWHLINDEVPLSIDLQTVLDCCCLALQQTVIWNLLASLSYASQACSIINCIKLLL
EAVAVQPGERFLQPERKKTIRDKSGPGDEVDASSQERLDSFKTACEIMAELVEGLRSVLA
LGHYRNNRIPAFLTPTLCNIIISLARLPLVNSYTRVPPLVWKLGWSPKPGGEFGTALPEI
PVEFLQEKDVFKEFLYRINVLGWSSRTQFEETWATLLGVLVTQPIAMDHEAENQQEEDLE
RTQINVLAVQAITSLVLSAMTIPVAGNPAVSCLEQQPRNKTLKALETRFGRKLSVIRGIL
EQEIQAMTSKRDNIATHFPYQAWDPVPSLSSAVSGTLISHEKLLLQINTEREMGNMDYKL
GQVSIHSMWLGNNITPLREEEWDEDEEDENDAPAPVSPPTSPINSRKHRAGVDIHSCSQF
LLELYSQWVLPSSPSNKKTPVILISEVVRSLLAVSDLFTERNQFEMMFSTLTELQKVHPA
EDEILNQYLVPAICKAAAVLGMDKAIAEPVSRLLETTLRSTHMPTRIGGLHGILYVLECD
LLDDTAKQLIPIISEYLLSNLRGIAHCVHLHNQQHVLVMCAAAFYMIENYPLDVGPEFTA
GIIQMCGVMVSGSEEATPSVIYHCVLRGLERLLLSEQLSRLDGEALVKLSVDRVNMPSPH
RAMAALGLMLTCMYTGKEKCSPGRAADSDPTAPDSESVIVAMERVSVLFDRIRKGFPFEA
RVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHATGQSSMVR
DWVLLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWISALLPHIISRMGKSELVDVNLFCL
VAMDFYRHQIDEELDRRAFQSVFEIVACPGSPYHRLLTCLQNVHQATPF
NT seq
9330 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaaactgatgaaggccttcgagtctctcaagtcattccagcaacaa
cagggaccaccatcggccgaagagctagttcagaaacagaagaaagatgcagcgaccacc
aaaaaggacagagtggcccattgtctgacaatatgcgaaaacattgttgcacagtctctg
agaaactcccctgagtttcagaagctcctaggaatcgccatggagatgttcctgctctgc
agtgacgatggggaatctgacgtaaggatggtagctgacgaatgcctcaacaaaatcatt
aaggcactaatggattccaatcttccccgcctgcagctggagttgtacaaagagattaaa
aagaatggagcttcgcggagcctcagagctgcactttggaggtttgctgaactgtcgcat
ctcgtgcgtccacaaaaatgcaggccgtatctggtcaatcttctcccctgcctgacgcgg
atcagcaagcgcccagaggagactgtccaggagacgctggcagcagccattccgaagatc
atggcagcactgggccacttcgccaacgatggagagatcaaggtcctgctgaaagcgttt
atcggaaacctcaagtccagctctccgaccatcaggcgcacggcagctagctcggccgtc
gccatctgccagcactctcgcaggacccagtatttctacacctggcttctcaatgtgctt
ctaggtctgctgcttcctgtggacgatgagcaccctgccccgctgatcttgggggtgctg
cttgccctgagatacctgatgcccttattgcagcagcaggtcaaggacaccagtttgaag
ggcagttttggggtcacgcgaaaagaggccgagatctcccccacaccggagcagctaatc
caggtgtacgagctgacgcttcactacacgcagcaccgcgaccacaacgtggtgacggcg
gccctcgagctgctgcagcaggccttccgcacgccgccgcaggacctgctgcacgccctc
atcacggccggcagcatcccgcgggtcagcatctcccgcgaggaggctgagaaccgaggg
cggagcagcagcatcctggagctcattgccggagggtcgtcaagcagtccacttctgctc
agaaaacaaaaaggcaagctgctctcaggagaagaagaagggctcgaggatgacacggag
accaggtcagaggtcagcactggaacctttacagcttctgtgaccagcgatggcaccagt
gaggtgcagtcttcctccgggatgtccactctgggctcggctggggggggtcatgacatc
atcacggagcagccccgctcctcacagcacaacctgcaggcggccgactccgtggagctg
agcggcgccgcggaccccccaagcggcccggccgccgggcagaccgccgaggaagaggac
gcgctgagccgcggctccagccagatcagcagcagcggcggcgccgacgccgacccccag
gcgtcctcgccggccagcgacagctcccagaccaccaccgaggggcctgactccgccgtc
accccgtcagactgctccgagctcgtcctggatggtactgaaagccagtactcagggatg
cagataggcacactccaggacgaggaagaggagggcagtggcaatcccctggaagagcct
ttgcaggccctcaccgatgccactatagccttgagcaaaccacacttgatggaaaatatg
ggccacagccggcagccatctgacagcagtgtagatagatttataccaaaggacgaagtg
gtggagaatgcagaacctgaaaacaagccctccagaatcaggggggacattggccactac
actgacccaaaggctgcgccgcttgtccactgtgtgcgacacctctcagcattgtttctg
ttgactggagagaagaacggccttgtcccagacagggaggtgcgggtgagtgtgaaggcc
ctggcggtgagctgcgtgggggcagccactgccctcctccccgaggccttcttcaacagg
ctgtacagacagcccctggagggggtcctgcaagaggagcagcagtatatatctgacatt
ttgaattatactgatcatggggacccccagatacgaggagccactgctatactgtgtggt
acaataatctactccattctcaacaagacacgctttaacatcgaaccctggttggccagg
gtcatgagctccacaggaaaccccatatctctggtaaactgtgtgcctttgcttcagaag
accctcagagatgagtcttcagtcacctgcaaactagcctgcactgctgtgaggcactgc
atcatggctctgtgcagcagcaccatcagcgaactcggcctccagcttgtcgttgacctc
ttggccctgaaggacagctcctactggctggtcaggactgagctacttgaaacactgtcc
gagatcgattttaggttaataagtttccttgaaagaagaactgagaccttacacagagga
gatcaccactacactggggtcatttcattttatttttggttactacaagccatagggctg
agggggggaaaaaagtatgaaaccagatttctcttgtgcttcagggtcgtctccagattg
ttctacgactgcgaccaaggtcaggcggatccagtggtggctatagccagagaccaaagc
agcgtctacttgcagcttctcatgcatgagacccagcctccctcccacttcacagtcagc
accatcaccaggacctacagaggctacaggatttcccagaatgcatctgacatcactaca
gagaacaacctctcccgagttgtcactgctgtgtcccacgcacttgcttcgtccacttca
agagctctcacatttggctgctgtgaggccctgtgcctcctgtcttcagcattcccagtg
tgcacctggagcacgggctggcactgtgggtacgtcagctcctccgccagccagccgttt
cgctccagcctctataagaacagggggcgctccttcagcctgtcccattcgaacagtgag
gatgcgaaaaagaactgcactgtgggcatggccaacatggtgctgtccctcttgtcctcg
gcctggttccccctggacctctcggcacaccaggacacactcatcctcgctgggaactta
attgcagccactgcccctaagtgccttaagagcccctggagcacggaggacgagaccggc
gccggggggacgaaacaggaggagccctggcccgcgctgggggaccggactgtagtcacc
atggtggagcagctcttctctcacctgctgaaaatcatcaatatctgcgcgcatgtcatc
gacgacgtggcccccgggcctgctgtgaaggccaccctgccctctcttgccaacacgcct
tcgctgagcccaataagaaggaaaggcaaggagaaggagccagcagagcaggctgctgcc
cccatgagcccgaaaaagagtagtgagagcaatccagctgccagaccagctgacaccact
gggaccaactctataaacaagtcatctacgctaggcaacttctaccatctccctccatac
ctcaaactctacgatgttctgaaggctacacatgccaactataaggtgacacttgacctt
cagaacaccagtgaaaagtttggagggttcctgcgggctgctcttgatgtgctgtcccag
ttgctagagcttgccaccctccaggacatcggaaagtgtgttgaagagatcctgggttat
ctgaagtcatgcttcagcagagaacccacaatggccactgtgtgtgtccagcagctgctg
aagaccctgtttgggaccaatctcgcgtctcagtacgacggctcctcctctaacccctgc
aagtctcaggggaaggcccttcggctgggctcctccagcctgcggcctgggctctaccac
tactgcttcatggctccctacactcacttcacacaggccctggccgacgccagcctgcgc
aacatggtgcaggccgagcaggagcaggacacttcggggtggtttgatgtgatgcagaaa
gtatccatccagctgagatcaagcatcactaatgtaacgaagcatcgagcagataagaat
gccatccataaccacatccgcttgtttgagcccttggtcatcaaagcactcaagcagtac
accaccaccacctccgtgtccctccagagacaggtgttggacctgctggctcagcttgtg
cagctcagagtcaactactgccttctggactccgatcaggtttttattggatttgttctg
aagcagtttgaatacattgaagtgggacagtttagggattcagaagccattgttcccaat
atcttctttttcctggtgctgctgtcctacgagcgataccactccaagcagatcatcggc
atccccaaaatcatccagctgtgcgatggcatcatggccagcgggaggaaggcggtcaca
cacgcgattccagctctgcagcctattgtccacgacctgtttgtgttgagagggtccaac
aaagccgacgcaggcaaagagctggagacccaaaaggaggtggtggtctccatgctgctt
agacttatacaataccatcaggtgctggagatgttcatcttagtgttgcagcagtgtcac
aaagagaatgaagacaagtggaagagactgtcacggcagatagcagatatcatcctgccc
atgatcgcaaagcagcagatgcacctggattcccatgaggcactgggggttttgaacacc
ctgtttgagactgtggctccttcatcactgcggcctgttgacatgcttctcaggagcatg
tttgtcacgcctagcaccatgtcctctgtggggacggtgcagctgtgggtatcgggtatt
ctggctgtcctgcgagtcctcatctcccagtccacagaggatattgtgctgtctcgcgtt
caggagctctcgctgtctccttacctcctctcctgccccaccatcgacaagctccaagac
tacagctcgcacacgcctccttcagcgggtcacacgggagaagctcagaataaataccct
ccagaggaaacgtttgcaaggtttcttctgcagctggttggaatcctgttggaagagatc
tccagtaaacaagttaaagtggacatgagtgagcagcagcacaccttctactgtcaacag
cttggcacactgctgatgtgcctcattcatatcttcaaatcaggtatgttccgaagaatt
actgcagctgccaccaagctgttgaagggcgatggctgtgagggcagcttctacaccctg
gagaatgtgagcagcatggtgcagtctctcatcaccacacacccctccctggtgctgctc
tggtgccagatcctgctcattatcaactacaccaactacacctggtggtcagaggtgcac
cagactcccaggaggcacagcctctccagcacaaagctcctgagcccccacatatctgga
gacgatgaagaggcccgaccagagtccaggctggccatgtgcagcagggagattgtcagg
agaggagcactgattctgttctgtgattatgtttgccagaaccttcatgactcagagcac
ctcacatggctgattgtgaatcacgtaaaggacctgattaatctgtcccatgagcctcca
gtgcaggatttcatcagtgccattcacaggaattcagctgccagtggtctcttcatacag
gccatccagtcccgttgtgaaaacctttcgacaccaaccatgttgaagaagaccctgcag
tgcctggaagggattcacctcagccagtcaggagctgtgctcatgctgtatgtggacaag
ctcatcaacacgcctttccgtgtcctggcacgcatggtggacacactcgcttgccgtcgg
atagagatgcttctcgcagaaacattacagaacagcattgcccagctaccacttgaagaa
ctggacagaattcaagaatatctgcagagcagcagcttagcgcagagacaccagcggctg
tactccctgctggacaggttccgagctacggttgccgaggagacggcaagtccttctcct
ccaatcacctcccaccctctggatggagatctgccccctgcccctgagaatgtgactgca
gacaaggagtggtatgtggcactggtcaggtctcagtgctgcctccgcacagacgctgct
ctcctggagtccacagagctgctaaccaagcttccgcagcctgacctctcctccatcatg
acttccaaggagttcaatttaaacctcctggacccttgtctcagtctgggtgcccaaaag
atgagcaaggagcagggcagcgtcctgtttgactcggctctgcaggtcactctcgaccac
ctgtccagcaccgtccagctcctgcccagccaccatcaggtcttcgctgcctcttcggcc
cctggtgactcggcttactggaacaagctgagcgacgtctacagcgagagagttttctac
cagactgtagtgagtctgtgcagagccttgagtcagtacctgctgtcgctttcaaagttt
ccaacggttcttctcatccccagcgaaaaggaggccgacatcaccaactttgtagtgatg
gcactggagactgttgcatggcacctgataaatgacgaggttccactgagcattgatctc
cagacagtactggattgctgctgtctcgccttacagcagactgtaatttggaacttgctg
gcttcgcttagctatgctagccaagcctgttctatcataaattgcattaaactccttctt
gaagcagtggcagtgcagcctggggaacgattcctgcagccggagaggaaaaagacgatc
cgggataagagtgggccaggggatgaggtggatgcctcttctcaagagagactggattct
tttaaaaccgcttgtgaaatcatggcagagctggtggagggtcttcggagcgtcctggca
ttggggcattacaggaacaacagaatccctgcatttctgacccctacactctgcaatata
atcattagtctggcaagacttccgctggtcaacagctacactcgagtgccaccgctggtt
tggaaattgggctggtccccaaaacctggcggagagtttggcactgcattgcctgagatc
ccagtggagtttctgcaggagaaggacgtcttcaaggagttcctgtatcgcatcaatgtc
ttgggctggagcagccgcacacagtttgaggagacctgggccactctcctgggggtgctg
gtcacccagcctatagcaatggaccatgaggcagagaatcagcaggaggaggacctggag
aggacccagatcaatgttcttgctgtgcaagccattacgtccttggtgctgagcgccatg
acaatccctgtggctggtaaccccgccgtcagctgcctggagcagcagcctcgcaacaag
accctgaaagcactggaaactcggtttggcagaaagctgagtgttattcgagggattctg
gaacaggagatccaggcaatgacatcgaagagagacaacatcgccacacatttcccctac
caggcttgggatccggtcccatccctctcttcagcagtctcaggtaccttgataagccat
gagaagctcctcctgcagataaacacagagagagaaatgggcaacatggattataaactg
ggacaggtgtccatacactccatgtggctgggaaacaacatcacccccctgagagaggaa
gagtgggacgaggatgaggaggatgagaatgatgctccggccccagtgtcgcctcccact
tcccccatcaactccaggaaacatcgtgctggtgttgacatccactcctgctcacagttc
ttactggagctctacagtcagtgggttctacccagcagccccagcaacaagaagacgcct
gtgatcctgattagtgaagtggttcgctcacttttagcggtgtcagacttgttcacggag
aggaatcagttcgagatgatgttcagcacgctgacggagctccagaaggtccaccctgcc
gaggacgagatcctcaaccagtacctggtccctgccatctgcaaggcagcagccgttctg
ggcatggacaaggcgatagcggagcctgtgagccgactgctggagaccaccctgcgcagc
acgcacatgcccacccgcatcggggggctgcacggcatcctgtacgtgctcgagtgtgac
ctgctggacgacaccgccaagcagctcatccccatcatcagcgagtacctcctctccaac
ctgcggggaatcgcacactgtgtccaccttcacaatcagcagcatgtgctggtgatgtgc
gcggcagccttctacatgattgagaactatccactggacgtgggcccagaattcacagct
ggcattatccagatgtgtggcgtgatggtctctggaagcgaggaggccactccgtctgtg
atttaccactgtgtcctgcggggtctggagcgcctcctgctgtcagagcagctgtcccgg
ctggatggggaggcactagtgaagctcagtgtggaccgggtcaacatgcccagccctcac
cgggccatggctgctctggggctcatgctcacctgcatgtacacaggaaaggagaagtgc
agtccgggacgggcagcggactctgatcccacagcccccgacagcgagtctgtgattgtg
gccatggagcgcgtctcggttctcttcgacagaatcagaaaaggcttccctttcgaagcc
agagtggtggcaagaatcctccctcagttcctggatgacttcttccctcctcaggatgtg
atgaacaaagtcattggggagttcctgtccaatcagcagccttacccacagttcatggcg
actgttgtttacaaggtattccagacattgcacgctacgggccagtcatcgatggttcga
gattgggttctcctgtctctttccaacttcactcaaaggacaccagtagccatggcgatg
tggagtctttcctgtttcttcgtcagcgcttcgactagccagtggatttcagccctcctt
cctcacataatcagcagaatggggaagtcggagcttgtggatgtcaacctgttctgccta
gtggccatggacttctacaggcaccagattgatgaggagctggaccggcgggctttccag
tctgtcttcgagattgtggcctgcccgggcagcccctatcaccgactgctcacctgtcta
cagaatgtccaccaggccacccctttctga
DBGET
integrated database retrieval system
