Lepisosteus oculatus (spotted gar): 102696785
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Entry
102696785 CDS
T07349
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102696785 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loc03021
]
102696785 (cpsf4)
03019 Messenger RNA biogenesis [BR:
loc03019
]
102696785 (cpsf4)
Transcription machinery [BR:
loc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102696785 (cpsf4)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102696785 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_3
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_4
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
102696785
NCBI-ProteinID:
XP_006637187
Ensembl:
ENSLOCG00000004814
UniProt:
W5MBM3
LinkDB
All DBs
Position
LG13:complement(9476619..9484039)
Genome browser
AA seq
269 aa
AA seq
DB search
MQELIATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACLKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPQCRHRHTRRVICVNYLVGFCPDGPNCKFMHPRFELPMGTSDQPP
LPQQQQTQQKQNIQPMNQRSSSLIQLTNTSSNSNHQRAPQVIGVMQSHNNATGNRGPRPL
DQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagttgatcgccacggtagatcatattaaatttgatctggagattgccgttgag
cagcagctgggagctcaacctctgcctttcccgggcatggacaagtccggtgccgctgtg
tgcgagttcttcctgaaagctgcctgtttaaaaggtgggatgtgccctttccggcacatc
agcggagagaagacggtggtctgcaaacactggctgagagggctctgcaagaagggggac
cagtgcgagttcctgcacgagtatgacatgactaagatgcccgagtgctatttctactcc
aaattcggagagtgcagtaataaggaatgcccattcctgcacattgaccctgaatcaaag
attaaagactgcccctggtatgaccgaggattctgcaagcacggtccccaatgtagacac
agacacactcggagagtcatctgtgtcaactacttggttggcttctgtccagacggaccc
aactgtaaattcatgcatccccgttttgagttacctatgggaacttcagaccagccacca
ttaccacagcaacaacagacacagcaaaagcaaaacattcaacccatgaatcagaggtct
tcatcgttgatccagttaaccaacaccagttcaaactccaaccaccagagggcgccacag
gttattggggtgatgcagtcccacaataacgcaactggcaacagggggccgcggcctcta
gatcaagtcacatgttacaagtgcggcgagaaaggccactacgctaacagatgtacgaaa
gggcacctggcgttcctgagtggacagtag
DBGET
integrated database retrieval system
