Lepisosteus oculatus (spotted gar): 102697188
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Entry
102697188 CDS
T07349
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loc03021
]
102697188 (setx)
Enzymes [BR:
loc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102697188 (setx)
5.6.2.5 RNA 5'-3' helicase
102697188 (setx)
Transcription machinery [BR:
loc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102697188 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
AAA_22
Viral_helicase1
UvrD-helicase
AAA_16
TIP49
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
102697188
NCBI-ProteinID:
XP_015222441
Ensembl:
ENSLOCG00000004264
LinkDB
All DBs
Position
LG21:8428688..8456893
Genome browser
AA seq
2595 aa
AA seq
DB search
MSTCRWCTPGGSEATELLKKYSSRSLSPEEENALNEDLCYCLECVVEYHRARDELPSFHK
LLWNLETSRLLDRFTQSCDAELEEDDLFIVEDDQEIYVPKFTGPEYENFLRVPLLEILKY
PYLLEHREISEMCVETLCKMEKVNSFQVFDKYPGIYLLLVHPNETVRKWAICTARSLGKV
DRDDFYDLQEVFSCMCRAIELDLILNSDLFSSYVRKEGKMVLLPPHLYDCSNYKNYWLGI
CMLLTVLDAQAMDSLLLGPDKQNDLMQSILNAMEKEEEDEKLDPFWPALQCFMVILDRLG
SKVWGKLIDPARAFQRITRSRSYQKELENLRQTTNGTKVELEDAMTTCSQIIYDCNKEKS
KDSGTKTAVNAENCAHLYEEMHSLMNVLQSDMGKEMRVHNSTFLWLISFVQSVVDLKELS
IVCIGEIVHFLCGEINNFINGQIQKCDKVTEFFILVLVFVIELHLNKSSMNILNYSSSIW
VDVIVNCAVLSVSAFSASSDSCTARKSSTSSLRTLSWHPQVSNVVPQACVQIIRSLLKEG
CKLSVERPSKYFLDLLNKHLRETAYREWRLSSSQLKNLQLCLRQLVANLNGKEESPGSGT
NSGDDMKYPIASIKQERVEEWDGCENQDNGMTSTSNTCERNTGLGVLHQNYPLKQEVPWD
GEDCGQLASGIHPNVGDRSFKTDLQDQYQLPLKKERTSPVHMCSDSNKSKISYSFKSEMP
DSVRSDDLKSEQNNGPLCKISEVISCPSSANDQKDDVSFVSKKNEGGQKLSNEECASGSK
RPLECISKYEASSGGPHISNVKYGKSESSDDDDDDVPLTVIMSNLHKTTSLYKTLKNSMQ
LTDPQTDRDVNLQSSTASSESTSFPSNSNKEYSVSRDRIERRVKCNARSGQALENQDVVI
LEPDTDSGAVIVISDSESAKDDNETPHANSKETCRNFKAQEMTIKCEHSKSIDLMNDVSK
SANNGGTDCGFNEYDSQLFEFETEEKVFSAWEDPEISTVVGDTENKDASNELPFLHSSED
LNDLCNDWGYETDFIPDDYIHKASEYAEELIKKQQISEDCIEKDPEKEPTTSSFNNDTKE
PPCRIAGENDDQSPISLLKKTLSKKLAEKRASSGASISNVTKDLGTYSKKGTNGRSLKKP
KETSSSSKNNFKKATTTLPLKVTGLPKVHSPSSLKPAIITPKKVRQQPEPNSTAEKLGLK
KRERKAFDLSQRSLDCVAQLRNYGQRFRIENETRKYRTTKSSLPSRQKQIPKNKRKMLAS
QDLQYFRLSRGKATNINRDGTSDPILGKRAKICSSSITQKKSSGLIDSLKAKENKQLAKE
EKDVISPKASAAKTGCSDGDAGGNKLFFLSSLPIPQVAESDQLERNCDLTSKEIPEVSST
TCSANELGVFAQLNTDLPQEVAGQPRKHEFKCDRVVDDDDDDDDDNMYLTQMDPVDMELC
PELDNADNFALTQRDPVDMEIDESESQVCKDDSGKVDSIREGQVAHSSWADTYASGSVEK
SVTSEQKDDHVFLKPGIPSPYLKQAKPSTTKIYAQSSRNANLAQEMEKTSKPLPAALKIR
AVRPPPPLRRSSMPPPESRSPLQPKTPVTPSSNPPESRIVAYKPRVPVCTPHERTDSSTT
KKPPHSASSFRFNQNDMIQQMLKWNYEMFCNYAQFGTPDDLCSFPLREVPTNFTSFEDYF
TTFYPLLMVNAFEELVNNWRQSKSTIRNSLRPVAVEYPNGVSNATFTASLTRSEVDRQLY
PKEEHLVCLWLHQHTNTYANEDSEMLEPIPSIGYVLRANISHGGDTPTLTLTIQTRVSFS
LQKLPVMCEVIGSLISTIRGFKGLSMLRNSLMARPLLSPNAAYFSFGEQKNVCHMPEFNT
DQVKAINCALTMIKEQRRTPKICLIQGPPGTGKTRTIVGLLQRIFTEDRENLMPQGNRIF
KGRKPRVLVCAPSNAAVDHLMRNIIVDFKGKCRNRQTPLGNCGDINLVRLGMEKAISDKL
LGFSLDHQIKVKTKKGQEHDTGIHRRKEQLDQELERVSNLLSSVNKKDILKLQRLTDEKF
KLLEERKQLGRMLRETKVKKQEIQTKIVLDAHVICCTLNTSGSILLESAFRRLGHDPFCC
VIVDEAGQATETETLIPLMHRCPCLVLVGDPEQLPPTVVSQKAKEKGYDQSLMARLWKSL
HRELRAKPHVPNPIIFLATQYRMHPDICEFPSRYIYDRALKTDGETAEKRCGISWPFQPY
ILFDVTDGFETRNEEYVRFWEGMNSFSNLQEVKLVIRLIKLIFEKQVTRVGVITPYSAQK
QKIKEYINKEQKLDTNKHFQSVEVDTIDGFQGCEKDCIIVSCVRACSTQGSIGFMGNRQR
LNVTITRAKFSLFILGHLRTLTEHKDWEALIQDAGKRGTIIKTREKDYNADARKIFKPEP
GFLRSFSFPPKDSSLLPKTSTPTDNRRMSADKSSMVKNSALPAARTTATVSRSQTSDSST
AGFHAPEKPAAPAQLPGKPSTSGRPRDPRLASRSAHIQQPRSTLAKSSVPSHPQSRVYGT
YGQSSAPSDCRTSAAGRSSTSCSAQNSSASRPSWCKDRDEDKDYRTPCPSRYDRPPPKRS
SDPRWSSSLEKHRKS
NT seq
7788 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctgtcgctggtgtaccccaggtggctctgaggccactgagctgctaaagaaa
tactcttccaggtcactttctcctgaggaagagaatgctctcaacgaggacctgtgctac
tgcttggaatgtgtggtggaatatcacagagccagggatgaactgccatcctttcacaag
ctgttgtggaatttggagacttcacgtctccttgatcgttttacccagtcatgtgatgca
gagctggaggaagatgatctgttcatagtagaggatgaccaagagatctatgtgccaaaa
ttcacgggacctgaatatgagaattttctccgagtcccactgcttgagatacttaagtat
ccttacctgctggaacaccgtgaaatcagtgaaatgtgtgtggagacactctgcaaaatg
gaaaaagtgaacagctttcaggtctttgataaataccctgggatataccttctcctggtt
catcctaatgaaaccgtgcgcaaatgggcaatctgcactgcgaggtctctggggaaggtg
gatcgcgatgacttctatgatctccaggaggttttcagctgcatgtgtcgtgctattgaa
cttgacctcatcttgaactcggacttattcagctcttacgtccgaaaagaagggaaaatg
gttctgcttccacctcacctttatgactgttctaactacaaaaattactggctggggatc
tgcatgcttttaaccgttctggatgcacaggctatggactccttgcttctgggccctgac
aaacagaatgacctcatgcagtcaattcttaatgccatggagaaagaagaggaagatgaa
aaattagatccattttggccagcgctgcagtgttttatggtgatcttggatcgtctgggg
tccaaggtttgggggaagctgattgatccagctcgggccttccagagaattactcggagc
cgcagttaccagaaagagttagaaaacctacggcaaaccacaaacggaaccaaagttgaa
ttagaagatgcaatgacgacatgtagtcagatcatctatgactgtaacaaggaaaaaagc
aaggattctggtactaagacagctgttaatgctgaaaattgtgcacacttgtacgaagaa
atgcattctttgatgaatgtgcttcagtctgatatgggaaaggagatgcgtgtccacaac
agcactttcttgtggctaatttcttttgtccagtctgtggtggatctcaaagaactcagt
atcgtctgtattggagagatagttcattttctgtgtggagaaattaacaatttcatcaat
ggacagatacagaagtgcgataaagtaacagaatttttcatccttgttctcgttttcgtc
attgagctgcatctcaacaaaagcagcatgaatattttgaattacagcagctcgatctgg
gtagacgtgattgtgaactgtgcggtgctgtccgtttcagcttttagtgccagttcagat
agctgtactgccagaaaatcgtccacttcatctttgaggacattgtcctggcacccccaa
gtgagcaatgtggttcctcaagcatgtgttcaaataatacgttccctcctgaaagagggg
tgcaaactgtctgtagaaagaccaagcaaatattttcttgacttgctgaacaaacatttg
cgtgagactgcttacagagaatggagactcagcagctcacagttaaagaacctacagttg
tgtttaaggcagcttgttgcaaaccttaatggaaaggaagaatcacctggctcaggcaca
aacagcggagatgatatgaaatatcccattgcttccatcaagcaggagagagtggaagaa
tgggatggctgtgaaaaccaagataatgggatgacatctacgtccaatacatgtgagaga
aacacagggcttggggtcttacatcaaaactatcccttgaaacaggaagtcccatgggat
ggtgaggactgtggtcagcttgcctcaggtatacaccccaatgttggcgatagaagcttt
aaaactgacctgcaagaccaataccagctacccttgaaaaaggaaagaacctctcctgta
cacatgtgttcagattcaaataagtcaaagatttcatactcatttaagagtgagatgcct
gattcagtaaggtcggatgacctgaaatctgagcaaaataatggccctttatgtaaaatt
tctgaagttatctcctgtccttcatccgcaaatgatcagaaagatgatgtatcttttgtt
agcaaaaagaacgaggggggacaaaaattgtccaatgaagaatgtgcttctggatccaaa
aggcctttagaatgtatttcaaaatatgaggcaagttcaggtggtccacatatttctaac
gttaaatacggtaaatcggagagcagcgatgatgatgatgatgatgttcctcttacagtc
ataatgtctaatttgcacaaaacaacaagtttgtataagacattaaaaaacagcatgcaa
ttaaccgatccccaaactgacagagatgttaatttgcagtcttcaactgcgagttcagag
agtacttccttcccttctaattcaaacaaggagtattcagtgtcacgtgacaggatagaa
aggagagtgaagtgtaatgccagaagtgggcaggcattagagaatcaggatgtagtgatt
ttggaacctgatacagacagtggtgcagtgattgtaatttctgattcagagtctgccaaa
gatgataatgagacaccgcatgccaacagtaaagaaacgtgtagaaacttcaaggctcaa
gaaatgaccataaagtgtgaacattcaaaatctatagatttgatgaatgatgtttctaaa
agtgcaaacaatggaggtaccgactgtggtttcaacgaatatgattctcagctgttcgaa
tttgaaactgaagagaaggtgttttctgcctgggaggacccagaaatcagtactgttgtg
ggagatacagaaaataaagatgcctcaaatgaactaccgtttcttcatagcagtgaagac
ttaaatgacctgtgtaatgactggggttatgaaacagattttattccagatgattacatt
cataaagcatcggaatacgcagaggaattgataaaaaaacagcagatatccgaggactgc
attgaaaaagatcctgaaaaagagccgacaacttcatcatttaataatgacacgaaagaa
cctccttgtcgaattgctggtgaaaatgacgaccagtccccgatatccttgttaaagaaa
actctcagcaaaaagcttgccgaaaaacgggcttcttcaggagctagcatctctaatgtg
acaaaggatttaggtacatattctaagaaaggcacaaatggcaggtccttaaagaagccc
aaagaaacatcttcctcaagcaaaaataacttcaaaaaagcaacaaccacgctgcctttg
aaggtaacaggtctgcccaaggttcattcaccttcttctttaaagccagctataataacc
cccaaaaaagtgcgacagcagccagagcccaattccactgcagaaaaactgggcttgaag
aagagagagcgtaaagcttttgatctttcacagagatctttagactgtgtagctcagcta
agaaactatggacagcgtttccgtattgagaatgaaacgcgcaagtataggacaacaaaa
tcttcactacctagccgacagaaacagattcccaaaaacaaaagaaagatgcttgcttct
caggatcttcaatatttccgtctaagtagaggtaaagcaacaaacattaacagggatggt
acatctgacccgattttgggcaagagagctaagatatgctcttcatccatcacacagaaa
aaaagtagtgggctgatagacagcctgaaggcgaaagaaaataagcagttggctaaggaa
gaaaaagatgtaatctctccaaaagcttcagctgcaaagactggttgtagtgatggtgat
gctggtggcaataagttattttttctgtcatcactgcccattcctcaagtagctgaaagc
gatcaactagaaagaaactgtgatttaacatccaaagaaatcccagaagtttcaagcaca
acttgcagtgcaaatgaactgggtgtttttgcccaattaaatactgacctgccacaggag
gtagctggtcaaccacgaaagcatgaattcaagtgtgacagggtggttgatgatgatgat
gatgacgacgacgacaacatgtacctcacacagatggatcctgtggatatggaattgtgt
ccagaattggacaatgcggataattttgctcttacacagagggaccctgtggacatggaa
atcgatgaaagtgaaagccaggtttgtaaagatgattcaggaaaggtggatagcattagg
gaagggcaagtagctcattcttcttgggccgacacatatgcttcggggagtgttgagaaa
tcagtaacatcggaacagaaagacgatcacgtcttcttgaagccaggtattccatccccg
tacctgaaacaggcaaagccttccacgactaaaatatatgcacagagctccaggaatgct
aacttggctcaggagatggagaaaacctccaagccattgccagctgctttaaagatcagg
gctgtccgcccgccaccgcctctcaggaggtctagcatgccgccacctgaaagcagatca
cctctgcagcccaagacccctgttacccccagttctaatccaccggagagccgcattgtc
gcttacaaaccacgagttcctgtgtgtacaccacatgaaaggacagattcttcaacaacc
aagaagcctcctcactctgcctccagcttcagatttaatcagaatgatatgattcagcag
atgctgaaatggaactatgagatgttttgtaattatgcccagtttggaacaccagatgac
ctctgctcttttccattaagagaagtccccaccaactttacatcttttgaggactatttt
actaccttctatcctttgctgatggtcaatgcctttgaagagcttgtaaacaattggaga
caatcgaaaagcacaattagaaattcattgagaccggttgctgttgaatatcccaatgga
gtttccaatgctaccttcacagcctcacttactaggtctgaggtggaccgacagctatat
cctaaagaggaacacttggtttgtctgtggctgcaccagcatactaacacgtatgcaaat
gaggatagtgaaatgttggaacccattccaagcattggctatgtcttacgagcaaacatt
tctcatggaggggacactccaacccttacactcactatacagactcgagtgagtttttca
cttcagaagctgcctgtaatgtgtgaggtgataggatcactcatcagcactattcggggg
tttaaaggtttgagcatgctgagaaacagcttgatggccagacctctactctcacccaat
gctgcttactttagttttggagaacagaagaatgtctgtcacatgcctgaattcaatacc
gatcaagtaaaggccattaactgtgcacttaccatgataaaagagcagagaaggacacct
aaaatatgtcttatacaagggccacctggaaccgggaaaaccagaaccattgtgggactt
cttcagcgcatttttactgaggatcgggagaacctgatgccacaggggaacaggatcttt
aagggcagaaagcccagggttctcgtttgtgccccatcaaatgctgctgttgaccatctt
atgaggaacatcattgtggattttaagggaaagtgcagaaatcgtcaaaccccattaggt
aactgcggggatattaatttagtacgccttgggatggagaaagccatttcagataaactg
ttgggatttagccttgatcatcagataaaggttaaaacaaaaaagggccaagaacatgac
actggaatccataggcgtaaagaacagcttgatcaggagctggaaagggtctcgaacttg
ttgagttctgtgaataagaaagacattttgaagcttcagcggctgacagatgaaaaattc
aagctgcttgaggagagaaaacagctaggacgtatgctgagggagaccaaagtcaaaaaa
caagaaatccaaactaaaattgtgctggatgcgcacgtgatctgttgcactctgaatacc
tctgggagcatactgttagaatctgccttccgaaggctagggcacgaccccttttgctgc
gtcatagtggatgaagcaggacaagccacagagactgagactctgattcctctcatgcat
cgctgtccttgtttggtcctggttggagatccagaacaactgccacccactgtggtctcc
cagaaagcaaaggagaaagggtatgaccagtcactgatggcacgtttatggaagtctctc
catcgggaattgagggcgaaaccgcacgttcccaatccaatcatatttttggccacgcag
taccgaatgcatcccgatatctgtgagtttccctccagatacatctacgacagggcactg
aaaaccgatggcgaaactgcagaaaagaggtgtggaataagttggcctttccagccatac
attctctttgacgtgacggatggcttcgagacaagaaacgaggagtacgtgagattttgg
gagggcatgaactctttcagtaaccttcaagaggtgaagcttgtaattcgtctgatcaag
ctgatctttgagaagcaggtcacccgggtaggggttatcactccctacagtgcacaaaag
caaaaaatcaaggagtacatcaacaaagagcaaaaactggacacaaacaaacatttccag
tctgtagaagtggacactatagatggctttcagggttgtgaaaaggactgtattatagtg
tcttgtgtcagagcctgtagcacacagggctctattggatttatgggaaatcgtcagcgg
ttaaatgtaacaattacacgagcaaaattcagcctcttcattttgggccatctaaggact
ctcacggaacataaagactgggaagcgcttatacaggatgctggtaaaagaggcaccata
ataaagacgagggagaaggactataatgcggatgccaggaagatctttaagcctgaacca
gggtttttaagaagtttctcctttccaccaaaagattcttccttgctacctaagacaagt
acaccaactgacaatcgcaggatgagcgctgacaaatcatcaatggttaagaactccgcc
ttgccagctgcacggacgacagcaacagtaagcagatctcaaacctcagattcttcaaca
gctgggtttcatgctccggaaaaacctgcagctcctgcccaacttccaggaaagccttca
acgtcaggtagaccgagagaccctcgtctggccagtcggagtgctcatatccagcaacct
cggtctacattggctaagagctcagtcccatctcatccacaaagcagagtatacgggacc
tatgggcaaagttcagctccttctgactgcagaacgagtgctgctggcagaagctcaaca
agctgctcggcacagaactcttcagcgtcacgtccctcctggtgcaaggacagggacgag
gacaaggactacagaacgccctgcccaagtcgatatgacagaccacctccgaaaagatcg
tcagatccaagatggtcctcttcactggaaaagcacagaaagtcctga
DBGET
integrated database retrieval system
