Lepisosteus oculatus (spotted gar): 102697767
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Entry
102697767 CDS
T07349
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102697767 (cstf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102697767 (cstf1)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102697767 (cstf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
CSTF1_dimer
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_DCAF12
Beta-prop_SPT8
Cytochrom_D1
PROPPIN
Frtz
DUF7099
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
102697767
NCBI-ProteinID:
XP_006639565
Ensembl:
ENSLOCG00000003418
UniProt:
W5M6N5
LinkDB
All DBs
Position
LG18:7152259..7159449
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AA seq
431 aa
AA seq
DB search
MYRPKATLRDRQHLYKLIISQLLYDGYTNIANCLINEVKPQSVVSPSEQLLQLAKLGMEN
DDSAVQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFLLVGTQHPT
LRLYDVNTFQCYVSSNPRDQHTDTISGVSYNPTANSYVTCSKDGSIKLWDGVSNRCVATF
DKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQMHRTQAV
FNHTEDYVLLPDERTISLCCWDSRSAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtaccgacctaaggccaccctgagggacaggcagcacctgtacaagctgattatcagc
caactgctgtatgacgggtataccaacattgccaactgcctgatcaatgaggtcaagccc
cagagtgtggtctccccttcagagcagctcctgcagcttgccaagctgggcatggagaat
gatgatagtgccgtgcagtatgccattgggcgctcagacactgttgcgccagggacgggc
attgacctggagtttgatgcagatgtgcagaccatgtcccccgaggcctcggagtacgag
acctgctatgtcacctcacacaaaggcccctgccgagtagccacctacagtcgggatggc
cagctgatagccacaggctctgctgatgcttccatcaagatcctggacacagagcgcatg
ctggccaagagcgccatgcctatagaggtgatgatgaatgagacagcccagcagaacatg
gagaaccaccctgtgatccgtacactgtatgaccatgtagatgaggtgacctgtctggcc
ttccaccccacagagcagatcctggcctcaggttcccgggactatacactcaaactgttc
gactactccaaaccctccgccaaaagagccttcaaatacatacaggaagctgaaatgctg
cgctccatctccttccatccctccggtgacttcctgctggtgggcacccagcaccccacc
ctgcggctgtacgacgtcaacaccttccagtgctacgtgtcttccaacccacgggaccag
cacaccgacaccatttccggcgtcagctacaaccccaccgccaacagctacgtcacctgc
agcaaggatggcagcatcaagctgtgggacggcgtgtccaaccgttgtgtggccaccttc
gacaaggcacacgacggggccgaggtctgctcggccatcttctccaaaaactccaagtac
atcctgtccagcggcaaggactctgtagccaagctgtgggaaatctccacagggcgcaca
ctggtcaagtacacaggtgccggtctgagtgggcgccagatgcaccggacccaggcagtg
ttcaaccacaccgaggactacgtgctgctgccggacgagaggaccatcagcctctgctgc
tgggactcccgctcggccgagaggaagaacctgctctccctgggacacaacaacatcgtg
cgctgcatcgtccattcgcccaccaaccccggcttcatgacctgcagcgacgacttccga
gcgagattctggtaccgtcgcaccactacggactag
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