Lepisosteus oculatus (spotted gar): 102698028
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Entry
102698028 CDS
T07349
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04510
Focal adhesion
loc04512
ECM-receptor interaction
loc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102698028 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102698028 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102698028 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
loc04147
]
102698028 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
loc00536
]
102698028 (col6a1)
Exosome [BR:
loc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102698028 (col6a1)
Glycosaminoglycan binding proteins [BR:
loc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102698028 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
102698028 (col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
Motif
Other DBs
NCBI-GeneID:
102698028
NCBI-ProteinID:
XP_015214759
Ensembl:
ENSLOCG00000009665
UniProt:
W5MTV8
LinkDB
All DBs
Position
LG12:23511149..23576020
Genome browser
AA seq
1014 aa
AA seq
DB search
MTYSTFFLTFLGFWAGSLTQEVLSKTFYGDCPVDLFFVLDTSESVALRIKPPEYYISQIT
GFTVSFIDQLQQSFYRCDRNLVWNAGALHYSDVIEVIQGLSSMPSEKSQLKQNVKNIKYI
GKGTHTDCAIKSGIEELLIGGSHHRENKYMIVVTDGHPLEGYKEPCGGLEEAANEAKHLG
IKVFAVAISPDHLETRLNIIATDYHYRRNFTAAGPIGSPLQDQKDTIRTIIDTMVKESEQ
VCCSFECQPQRGTPGNKGEEGFQGESGRSGLPGEKGDVGEAGRPGDPGPIGYQGMKGDRG
SRGDKGERGPKGYKGDKGRHGIDGVDGGKGEAGYPGLSGCKGSPGPDGEVGDPGPKGDPG
PYGRKGERGEPGRNGTRGRPGNNGAPGVKGLPGPKGSNGEKGERGDDGEPGPDGEVGEKG
GRGENGPQGRPGVRGPRGEPGEKGNPGEPGREGPVGINGDPGEPGRLGPKGYKGDEGPAG
PEGLKGTRGPKGTPGDPGLMGQRGEDGSPGTGTEGFPGFQGYPGRRGEQGLEGPKGYPGP
KGDEGEPGVPGEDNNIPGPPGANGPKGHRGPEGNPGPPGPPGPPGADECEVLDIIMKMCS
CCECKCGPIDLVFVVDSSESIGHQNFELSKEFIVKVIDRLSKDERVKFDGQESRVGVVQY
SHEYTQELITLGDANITSIRELKAAVKNMKWIAGGTYTGSALQFSLDNLIVQLQKDNRVV
LVLTDGRSDTSRDPTKLSVLCDHNVQVVGVGVGDVFRKTPNIEQLGQMTCASAPKPGITL
QRDNYAELLDESFLLNLTSHICQEKKCPDYTCPIAFDSDADITIMMDSSTSVGSRNFQTK
KKFVKRLAERFLNAKKQSNAEVRVSIGQYSGRDQQKIEVPFSENFTEIAARVDKIQFLNE
ATDVSEALSFLISKYSGSRFGVKKKILIFSDGRSQGITESIIEKRVREADAIGITLYVLA
VGNQVNEANLRHLVSRGRPYDVAYAQRHLFRAPDYPSLLRGVFYQTVSRKMSLN
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgacttattcgacattttttctaacttttttgggcttttgggcagggtcgctaactcaa
gaggtcctttccaaaacgttttatggagactgtcctgtggatcttttctttgtactggat
acatctgaaagtgtggccttgaggatcaaacctccagaatactatatcagccagattaca
ggtttcactgtgtctttcatcgaccagctacaacaaagtttctaccgctgtgatcggaat
ctggtgtggaatgctggagccttacactacagcgatgtaatagaagtcattcaaggactc
agctcaatgccgagtgaaaaatcgcagctgaagcaaaatgtgaagaacatcaaatacatc
gggaagggcacccacactgactgcgccatcaagagtggtattgaagagctgcttattggg
gggtctcatcatcgagagaacaagtacatgattgtggtgactgatggacatccccttgaa
ggctacaaagagccctgtggtggcttggaagaggctgccaatgaagcaaaacacctcgga
ataaaagtgtttgctgtggccatctcacctgatcacctggaaacaaggctcaacattatt
gcaactgactaccactacagacggaacttcactgcagcaggtcccataggttccccacta
caggatcaaaaagatacaattagaaccattattgacaccatggtcaaggagtcagaacaa
gtgtgctgttcctttgagtgtcagccacaaagaggcactcctggaaataaaggagaggaa
ggatttcagggtgagtcagggaggtctggactacctggagagaagggagacgtaggcgaa
gcgggaagacctggtgatcctggaccaattggttatcaaggcatgaagggagacagaggt
tcccgtggtgacaagggagaaaggggtcccaagggctacaaaggtgacaaggggagacat
ggaattgatggagtcgatggcggaaagggtgaggctggataccccggactttctggatgc
aaaggatctccgggacctgatggtgaggtgggagatccaggaccgaagggagatcctggg
ccctatggcagaaaaggagaaaggggtgagcctgggagaaacggaactaggggaagacct
ggaaacaacggtgcacctggagtcaagggtttgccaggaccaaaaggaagtaatggcgag
aaaggagaaagaggggatgacggtgaacctggtccagatggagaggttggagaaaagggt
ggccgtggggagaatggaccacaggggcgtccaggagtcaggggacccagaggagagcct
ggtgaaaaaggaaacccaggagaaccagggcgtgagggaccagtgggaataaatggagac
ccgggtgaacctggtcgcctaggaccaaaagggtacaagggagatgagggacctgcagga
cctgagggcttgaaaggaacaagaggtcccaaaggcacccctggagatcctggactgatg
ggacaaagaggagaagatggttccccaggcactgggacagaaggattccctggcttccag
ggttatccaggacgtagaggagaacaaggattagaaggtccaaagggctaccctggacca
aaaggagatgaaggagagccaggagtccccggtgaagataataatatccctggacctcca
ggtgcaaatggaccaaagggccacagaggacccgaggggaatcctggaccacctggccct
cctggccctccgggtgctgatgaatgtgaagttttggatatcatcatgaagatgtgctct
tgttgtgaatgcaaatgtggacccattgaccttgtctttgtagtagacagctcagagagc
attggccatcaaaactttgagctttctaaagagttcattgtcaaggtcattgacagacta
agcaaggatgagcgagtcaagtttgatgggcaggagtcccgtgttggcgttgttcaatac
agccatgaatatacgcaggaacttataacattgggagatgctaacattacatccatcaga
gaactaaaagcagctgtgaagaatatgaagtggatagctggcggcacttacactggatca
gcacttcagttctcactggacaacctcattgttcagttacagaaggataaccgggtggtc
ctggtgttgaccgatggacgctctgacactagccgagaccccacaaagctctcagtgttg
tgtgaccataatgtccaggtggttggtgtcggtgtaggggatgttttccggaaaacaccc
aacatagaacaacttggccaaatgacatgtgctagtgcaccaaaacctggtatcactctg
caaagagacaactacgcggagcttctggatgagtccttcctactgaacctaacttcacac
atctgtcaagaaaagaaatgcccagattacacctgtccaattgcttttgacagtgatgca
gacatcactatcatgatggacagttctaccagcgttggaagccgcaattttcagaccaaa
aagaagtttgtgaagcgtctggcagagcgttttctcaatgctaagaagcagtcaaatgct
gaggtgcgggtttctataggccagtacagtggcagggatcagcaaaaaattgaagtcccc
ttttcggagaacttcactgaaatagcagccagggttgataaaatccagttcctcaacgaa
gccacagatgtctcggaggccctcagcttcttgatatcaaagtattcagggagcaggttt
ggggtcaaaaagaagatccttattttctcggacgggcgatcccaaggaatcacagaaagc
attatagagaagcgagtgcgagaagctgatgcaatagggatcacattgtatgttttagca
gttggcaaccaagtgaatgaggcaaacctgcgccacttagtcagccgggggagaccctac
gatgttgcctatgcccagcgtcacctcttcagggctcctgactatccttctctgttgaga
ggggtgttttatcaaactgtgtcaagaaaaatgtcattgaattga
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