Lepisosteus oculatus (spotted gar): 102698368
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Entry
102698368 CDS
T07349
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
102698368 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
loc01009
]
102698368 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
loc04515
]
102698368 (pcdh20)
Protein phosphatases and associated proteins [BR:
loc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102698368 (pcdh20)
Cell adhesion molecules [BR:
loc04515
]
Cadherins
Protocadherins
102698368 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
DC_STAMP
DUF6724
Cadherin_C_2
EphA2_TM
Ly49
TMEM100
Motif
Other DBs
NCBI-GeneID:
102698368
NCBI-ProteinID:
XP_015219105
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Position
LG17:10425134..10431536
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AA seq
888 aa
AA seq
DB search
MFSKITFSLTIILQGFCILLLFLRPLPCFSTYSKAKEIIYKINEGLPRGTLIGAIGADLK
LDFSVDPPLSFSLGLKKISGQYVNLNNTTGELHTSANKIDREALCPEKFGNHDCTISLDI
IILPQQYFQLVKVKIVIKDINDNAPRFPSDEIHVFVPENAQINSRFAIEHSAVDPDIGVH
GVQTYWLVNDYGVFTLDVEENENGELTPFLIITGFLDRETKNEYVTNIIAEDGGIPQLLG
TATLKIIITDVNDNCPIFTESHINVTLHGNSTKGAHVTQVHAFDPDLDSNAQITYVYSER
VPRDTTALFSLDKSTGAIKLAGKIDGNTGIFHKLTILANGPGCIPTVAVVIVHIIKVFFS
PPAVIPRYIATEKDGTVYLKESEPPSTPIAFFTLQNPDQKQKAHCYLEADGPFRLSPYKL
FTNEYLLETTEPLDYEEKQEYQLTVAANNSQDVVLKILIKVQVIDENDNSPVFQLHLVDL
TIEENNAPNTFLTKLHATDEDSGSRGDVFYLLGSDAPSIFTLDKVTGVLMVSTSLDREEK
EKYRFTVKAVDCGSPQKEATANVIITVLDKNDNSPRFINKDFSFFVPENFPGYGEIGVIS
VTDADSGKNGWVALSIVNGSDIFVIDTGKGALRAKVPLDREQKSSYFLWIEAVDGGDPAL
SCVTMVTILLLDVNDNPPLVLFPQSNVSYMLVLPTTLPGTSITEVYAVDRDTGMNAVIAY
SIIGRRGPRPESFRIDPSTGNITLQEALMKNDYGLYRLLVKVSDQGLPEPLHSTVMVNLF
VNETVSNETYIQSLLTKEPEIKIEERPPEKLTELGEKEIEHFRCLPVVIALSAACLVLLS
VVIVLVASMCLKKRKRHKKKEKTTVKMNAKANSFLDMTERKLMEASNI
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcaaaatcaccttcagccttactataatattgcagggattttgcattcttctg
cttttcctcagacctctcccctgcttttcaacttacagcaaagcaaaagaaatcatctat
aaaataaatgaaggattaccaagaggaacactaataggggccattggagcagatttaaag
ttggatttctccgttgatccccctctttcattcagtctggggttaaagaagatcagtggt
cagtatgtgaacctgaataacaccacaggagaactgcacacatctgccaacaaaattgac
agggaggctctctgtcctgaaaagtttggaaaccacgattgcactatatctctagatatt
atcattttgccccagcaatatttccagctagtgaaagttaaaattgtcattaaggatatc
aatgacaatgctccaagattcccttctgatgaaatccacgtttttgttccagaaaatgca
cagatcaactcaagatttgcaattgagcactctgctgttgaccctgacattggagttcat
ggagtacagacatactggttagttaatgattatggagtttttacattagatgtggaagaa
aatgaaaatggtgaactgacacccttcttgattataactggcttccttgacagagaaacc
aagaatgaatatgtcaccaatatcatagctgaggatggaggtattccacagcttttaggc
acagctaccctcaaaataattataacagatgtcaatgataattgcccaatatttactgaa
tctcatattaatgtcactttgcatggaaattccaccaaaggagcacatgtaacacaagtt
catgcctttgatccagatttggattcaaatgcccagataacatatgtctatagtgaaaga
gtcccaagagacacaacagcattatttagtcttgataaaagtacaggagctattaaacta
gcaggtaaaattgatggaaacacaggtatttttcataaactaactatacttgcaaatggg
ccaggttgtataccaacagtggcagtagtgatagtgcacatcattaaagtgttcttcagt
ccaccagctgttataccacgttatatcgctactgaaaaagatggaactgtatacctaaag
gaatcagagcctccttccaccccaattgcatttttcactttacaaaatccagatcaaaag
caaaaggcacactgctatttggaggctgatggccctttcagattatcaccttacaaattg
ttcacaaatgagtatctgctagagactacagagcccttggactatgaggaaaaacaagaa
tatcaactgactgtagctgccaataattcacaagatgttgttctaaaaatcctgattaaa
gtacaagttatagatgagaatgacaactcccctgtttttcagctgcatctagttgatttg
acaattgaagaaaacaatgcccccaacactttcctgacaaaactgcatgcaacagatgag
gacagtggaagcagaggagatgtcttttatctactaggatccgacgccccttccatcttc
actctggataaagttactggagttctcatggtctccacatcacttgaccgagaagaaaaa
gaaaagtaccggtttacagttaaagcagtggattgtggttcaccacagaaggaagcaaca
gctaatgtcatcatcacagtgctcgataaaaatgacaacagtcctcggttcatcaacaaa
gatttcagtttctttgtccctgaaaattttccaggatatggagaaattggagtaatctct
gtcactgatgctgattcaggaaagaatggttgggttgcattatctattgtcaatggcagt
gacatttttgttatagacactgggaaaggagctctgagagctaaagtaccattggacaga
gaacagaagagttcgtactttttatggatagaggcagtagacggaggggacccagccctt
tcttgcgtcaccatggtcaccattttacttctggatgtcaatgacaatccccctttggtt
ttgtttcctcagtctaatgtatcctatatgcttgtgctgcccacaacccttccaggaaca
tccataactgaagtctatgcagtggacagagacactggaatgaatgccgtgatagcctac
agcatcattggccgacggggcccacgacctgaatcatttaggattgatccaagcacaggt
aacattactttgcaggaagcattgatgaagaatgattatggcctttacaggctgcttgtc
aaagtcagcgatcaaggcctgccagagcctcttcactccaccgtaatggttaatttgttt
gttaatgagacagtaagcaatgagacctacatacagagtttattgactaaagaacctgaa
atcaaaatagaggaaaggcctccagaaaaactgacagagcttggagaaaaggagatagaa
catttccgctgtctgcctgtcgtaattgctctatcagcagcatgtctggtactgctatct
gtagtaattgtattggttgcaagtatgtgcttaaagaaacggaaaaggcataaaaagaaa
gaaaagacaacagtaaaaatgaatgcaaaagctaattctttcttggacatgacagaaagg
aagctaatggaggcatctaatatatga
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