Lepisosteus oculatus (spotted gar): 102698887
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Entry
102698887 CDS
T07349
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-1-like
KO
K06243
laminin, beta 2
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04510
Focal adhesion
loc04512
ECM-receptor interaction
loc04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102698887
04518 Integrin signaling
102698887
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102698887
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
LAMB1
TRIM_CC
DUF948
F5_F8_type_C
EB1
Fib_alpha
Motif
Other DBs
NCBI-GeneID:
102698887
NCBI-ProteinID:
XP_015203407
Ensembl:
ENSLOCG00000013159
LinkDB
All DBs
Position
LG5:complement(40862857..40928777)
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AA seq
1781 aa
AA seq
DB search
MGTGHIPSVYKMTHLSGIFILFLSVVAQELPSVPHGCTEGSCYPATGNLLIGRARDLTTT
STCGLQSPEHYCIVSHLQESDKCFLCDSQRPYDPIWHRNSHHVSNVIYLQDQNGDLTWWQ
SANGEENVSIRLNLEAEFHFTHLIMKFKTFRPAAMLIERSADFGRTWKPYRFFSYNCTKM
FPRVPARPLQLIDDVICEERYSDIEPSTLGEVIYKVLDPAIDVKDPYSLEIQELLRITNL
RINFTKLHTLGDNLLDRRTEVLQKYYYALYELVVRGSCFCYGHASECAPIAGITATVPGM
IHGRCVCKHNTEGLNCEQCKDFYNDLPWSPAEADNPHTCRECNCNGHSSRCHFDMAVYQA
TGNVSGGVCDDCLHNTMGRNCEMCKPFYYQDPLRDIRDPAVCIPCDCDPVGSLDGGVCDS
LTDLDIGMIAGQCRCKQNVKGTRCDCCKEGFYGLSQNDPLGCQPCNCDPRGIIMGGAPCD
QISGDCSCKRYVTGRYCNQCLPEYWGLSNDIAGCRACDCDFGGAYNNRCLMENGQCDCRP
HIIGRQRXKEQPAFKSAHLHCDLQCLRVVSLSLXGKPRPKAETDCVEHLNNQLRRHRRHR
RIANAQQQRAALRRIRQLQQTPDVKIVHRERSPGHMVTWTGPGFARVKDGAGLVFQISNI
PFAMEYDIMIRYEPESTEDWEAIVSISSVLLPTSSRCGNVLSSEQMYHVTLPHQTRYVKM
PRPFCFESNNRYVVAIRFQRHRASQRHLTAFILVDSLVLIPKYTELPGFNGNDPVSVHHR
EEMEHYMCLDSFMMVPKPMLAEMCTKLLCSISAILHDGALPCQCDPQGSLSTVCEKVGGQ
CHCKPNVIGLHCDRCAPGTFGFGPYGCIACDCHSHGSVSSLCDPLSGQCRCHHGATGRQC
ANCHPGHWGFPNCRPCQCNGHSESCDPSTGACINCRDYTAGEQCEGCMKGFYGNPVLGSG
DHCRPCPCPGNPGSAHSNGESCYADPSSNQVICNCKQGYAGPRCDRCASGYFGNPERAGG
ECRPCQCNGNIDTLDPGSCDPRTGQCLKCLYNTDGPTCGECRPGYYGNALIPQNCRRCTC
AAVGTLQSQCQGDLCYCDKKTGACPCRPSVIGQNCDQCAPQHWNLGRDLGCEPCACHLQH
SLRADCNMFTGQCHCRPGFGGRVCSECQEDYWGDPTTECKECSCDPFGAEISQCDRQTGH
CQCREGATGPRCDQCSRGFTGNFPKCVRCHPCFDQWDGVVSRVWAELERVREQVKKIQAT
GITSSLNDARIRDLEKKLENIQRLIDDRASEKIYPLVKQYADDLRAAIDNTDGRLMGIFG
DLNSTMQKDRKQLQSLDLLETDLGDLNSTVAKLRRRLESLITAGITEQFEEVRKYYKESL
GAERRCNGSVSGPDSPVGQSQETRRRAEDLMKKQADKFQRTMAAHKKSLKELQDKSKDMN
KKVHQLSRKVCGSTSGQESCTDSTCGGAGCRDEQGQLKCGGVTCNGTVGTSVRTLKLVND
IAANMSTANDELQNVAKKLQDIEMLMQEVKTQAKGALEKAQKNKEDFVNSNKKLKEFIQK
IRDFLTEEGADPGSIELVAQQVLAISLPVNGANIAREIKDSIANLTDVEKVFNTTSQQLR
IVEELLQNARDAKTRAEGVKGLVNETKMTLDDAKTAAESAEKALRKAQKNINSAQNATDL
EMENVEQKFKELQKKVDGMNGGSGAIDDIDKKLKDIKKDAEDLLNKANNGMTALDDLEKR
YRINEKRMQEQRDELADLERNVTSIRDIIREHVTQYNTCIL
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atggggacagggcacatcccatcagtgtacaagatgactcacctgtctggcattttcatt
ctatttctcagtgtcgtggctcaggaactgccatctgtgcctcatggctgtacagaggga
agctgttacccagcaaccggtaacctgctcattggccgagctagagacctgacaacaacc
tccacctgtggcctgcagagcccagagcactattgcatcgtcagccacctgcaggaatca
gacaagtgtttcctgtgtgactcccaaaggccatacgaccccatctggcacaggaacagc
catcatgtgagcaacgtcatctacctacaggaccagaatggggatcttacctggtggcag
tcagcaaatggagaagagaatgtcagcatccgattgaacttggaagcagagtttcacttc
acgcacctcataatgaagtttaagacattccgcccagcggccatgctgattgagcggtcg
gcggatttcgggcgcacgtggaaaccgtaccgcttcttctcctacaactgcaccaaaatg
ttcccccgtgtcccggcgagacccctgcagctcatcgatgatgtcatctgcgaggagcgc
tactccgatatcgagccctccacgctgggggaggtcatttataaagtactcgaccctgcc
attgacgtcaaagacccctacagcctggagattcaagagctccttcggataaccaacctg
cggatcaacttcaccaaactgcacacactgggggacaacctcctggacaggcgcacggag
gtgctgcagaagtattattatgccctctatgagctggtggtgcgtggcagctgcttctgc
tatggccatgcctcagagtgtgcccccatcgctgggatcactgccacggtgccaggaatg
attcatggcagatgtgtctgcaagcacaacaccgagggtttaaactgcgagcagtgtaaa
gacttctacaacgatcttccctggagtccggctgaggcagacaacccacacacctgcaga
gaatgcaactgcaacggtcactccagccgttgtcactttgacatggcggtgtaccaggcc
acagggaatgtgagcggaggcgtttgtgacgactgcctccacaacaccatgggccgcaac
tgcgagatgtgcaaacccttctactaccaggaccccctgagagacatcagagacccagct
gtctgcataccgtgcgactgtgaccctgtgggctccctggacggcggggtgtgtgacagc
ctcacggacctggacatcgggatgattgctggccagtgccgctgcaagcagaacgtcaag
ggcacccgctgcgactgctgcaaggagggcttctacgggctcagccagaatgaccccctg
gggtgccagccatgcaactgtgaccctcgtggaattataatgggaggagccccgtgcgac
cagatcagtggtgactgttcatgtaagcggtatgtcacaggccgctactgcaaccagtgt
ctgccagaatactggggcctcagtaacgacattgcaggctgcagggcttgtgactgtgat
tttggaggagcctacaataacaggtgcctgatggagaatggacagtgtgactgtcgccca
cacatcattggccgacaaagatgaaaagaacagcctgcttttaaaagcgcacacttacac
tgtgatcttcagtgtcttcgtgttgtctctctctctctctagggaaagcccagaccaaaa
gctgagactgactgtgtggagcacttgaacaaccaactcaggaggcaccgccgccatcgg
agaatcgccaacgcccagcagcagagggcagcactgaggaggatccggcagttgcagcag
acgcccgatgtgaagatcgtgcacagggaaagatctcccggacacatggtcacgtggaca
ggccccggctttgcgagggtaaaggatggagcgggcctagtgttccaaatcagcaacatc
cctttcgcgatggagtatgatatcatgatacgatatgagccagagtcaacagaagattgg
gaagccatagtgagcatctcatctgtcttgttacccacaagttcccgctgtggaaatgtg
ctttcttctgaacaaatgtatcatgtgacactccctcatcaaacaagatacgtcaagatg
cccagaccgttttgctttgagtcaaacaaccgctatgttgtagcaatccgcttccagcgt
cacagagcctcccagagacatctgacagctttcatactggtggactctttggttctgatt
ccaaagtacactgagctgccaggtttcaatgggaacgacccagtgtcagttcaccacagg
gaagagatggagcactacatgtgcctggactccttcatgatggtgcccaagcccatgctg
gcagaaatgtgcaccaaactcctctgcagcatctcggccatcctgcatgatggggcatta
ccctgtcagtgtgacccccagggctccctcagcacggtgtgtgaaaaggtcggagggcag
tgccactgcaagcccaatgtgattggcctgcactgtgaccgatgtgctccagggacattt
ggttttggcccttatggctgcatagcttgtgattgccattctcatgggtcagtcagcagc
ctgtgtgaccctctctcgggccagtgtcggtgtcatcacggagccacaggaaggcagtgt
gccaactgccaccccgggcactggggtttccctaactgccggccttgccagtgcaacggg
cactcggagagctgtgacccatccacgggagcctgcatcaactgcagggactacactgct
ggcgagcagtgcgaggggtgtatgaaaggcttctatggaaaccctgttctgggctctggg
gatcactgccggccgtgtccctgtccagggaacccagggagcgctcactcgaacggggaa
tcctgttacgctgacccttcgtccaaccaagtcatctgcaattgcaaacaaggatacgca
ggcccccgctgtgaccgatgcgcctctgggtattttgggaacccagagagagctggtgga
gagtgtcggccttgccagtgcaatggcaacatcgacactctggacccgggctcgtgtgac
ccccggacgggccagtgtctgaagtgtctctacaacacagatggaccgacctgcggggag
tgtaggcccggttactatggcaacgccctgatacctcagaactgcaggcgctgcacatgt
gctgctgtgggcaccctgcagtctcaatgccaaggagacctgtgctactgtgacaagaaa
acaggggcgtgcccctgccggcccagcgtcattgggcagaactgcgatcagtgtgcaccc
cagcactggaatttgggcagggaccttggctgtgagccctgtgcctgccacctccaacac
tccctgcgtgctgactgcaatatgtttaccggacaatgtcactgccggcctgggtttgga
ggacgagtgtgttctgagtgccaggaggattactggggagaccccaccacagagtgcaaa
gagtgcagctgcgaccccttcggcgccgagatctcccagtgcgaccgacagacagggcac
tgccagtgcagggagggggcgacgggtccgcgctgtgaccagtgctcccgcggcttcacc
gggaacttccccaagtgtgtgcgctgccacccctgcttcgaccaatgggacggggtggtg
tcccgcgtgtgggcggagctggagcgcgttcgggagcaggtgaagaagatccaggccacc
gggatcacctccagcctcaatgacgcccgcattcgggacctggagaagaagctggaaaac
atccagaggcttattgatgacagggcctctgagaagatctaccccctggtcaagcagtat
gctgatgacctgagggcagcgatagacaacacagatgggaggttgatgggcatttttgga
gacctgaacagcaccatgcagaaagacaggaagcagctccagagcctggatctccttgaa
acagatctcggagatctcaacagcacagtggccaaactccgacgcagactggagagcctt
atcactgctgggatcactgagcaatttgaggaggtccgtaagtactacaaggagtccctg
ggtgcagagagaagatgcaatggctcagtttctggccctgacagccctgtgggacagtca
caggaaacaagacgacgggctgaggacctcatgaagaaacaagcagacaaattccagcgc
acaatggcagcccataaaaaatccctgaaagagctgcaagacaaaagcaaagacatgaac
aagaaggtccatcaacttagccgtaaggtctgtggaagcaccagtgggcaagagagctgc
acagacagcacgtgtgggggtgctggttgccgtgacgagcagggtcagctgaagtgtggt
ggggttacctgcaatggaactgtgggtacatctgtgagaactctgaagctggtcaatgac
atcgctgccaacatgtccactgccaacgatgagctgcagaacgttgcaaagaagctgcag
gacattgagatgctgatgcaggaagtaaaaacccaggcaaagggggcattggaaaaagct
cagaaaaataaggaggactttgtgaactccaataagaagcttaaagaattcatccagaag
atcagagatttcctgactgaggaaggagctgatccagggagcattgagctggtggcccag
caggtgctggccatctcgctgcccgtcaatggagccaacattgcccgggaaatcaaggac
agcatcgccaacctgaccgacgtggagaaagtcttcaacaccacctcccagcagcttcgc
atcgtggaggagctcctgcaaaatgctcgtgatgcaaagacccgggcagaaggagtgaag
gggcttgtcaatgagacgaagatgacattagacgatgccaagacagcagcagagtcagca
gagaaagctctcagaaaggctcagaagaacatcaacagtgcacaaaatgccacagacttg
gagatggaaaatgtggagcagaaatttaaagagcttcagaaaaaagtggatggtatgaac
ggaggaagtggagccattgatgatattgacaagaaactgaaagatatcaagaaagatgct
gaggacctcctcaataaagccaacaatggcatgaccgcactagatgatctcgaaaagagg
tatcggatcaatgagaagaggatgcaggagcaaagggatgaactggctgatctggagcgg
aatgtcaccagcatcagagacattatacgtgaacacgtgacacagtacaacacctgcatt
ttataa
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