Lepisosteus oculatus (spotted gar): 102698995
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Entry
102698995 CDS
T07349
Symbol
rc3h1
Name
(RefSeq) roquin-1 isoform X2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
loc03000
]
102698995 (rc3h1)
04121 Ubiquitin system [BR:
loc04121
]
102698995 (rc3h1)
Transcription factors [BR:
loc03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
102698995 (rc3h1)
Ubiquitin system [BR:
loc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102698995 (rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-C3HC4
zf-CCCH
Prok-RING_4
zf-CCCH_4
zf-C3HC4_2
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
102698995
NCBI-ProteinID:
XP_006643142
Ensembl:
ENSLOCG00000000279
LinkDB
All DBs
Position
Unknown
AA seq
1108 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IEQLPVNSALLQLVGGQVPKQQPITLLTGAEDTKHYDEARKCVEELALYLKPLSSTRGVG
LNSTTQSMLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARRNISQSLTQLNDSSLLPDDGGLDG
SVRKSSPMANGIIAVGSGSTLTQLISRGTEPPYDPGRKPGKMDSLSAPGSPPDSLDSVPK
NTLSTLPMNPQHMTHARMPTDHPSMHKQVSVVPRAPQMYPQQQPEIFYQEPRPPPSSSQY
ETTAQYRTGNPYTYQPPQYVQPRYVQPGQSEPGMPYQDPYPYVPERQYPSPPAQYPAQPV
YQTHYDSRRPYASTQSYQRDDMVRHSPVPVDMPPPAAGSPYLTDSRERYLPEGYCPVGPH
PGQMRSYPRDPYNRTSQPSLDYLHRRRKEIMAQLEERKVISPPPFAPSPTLPHSFPPDFP
QEYMEENSKAFGKCTREHDLTGQYSPWSCDTIGSYIGTKDLKPKEIMASGTMEMMNVDSK
GLREQQLDMQRRSAEAKDDDPIIPFGPLPTVSRFGAISRTSKTGYQTTGPVQAMTSTQAH
GSAATKHVPVAADYTYENHRGWGGASYQQHQTVTSQGHFSERPPMPPPDREQLKMELQQV
NQQISQQTQIRGLEAASNTMLLQREPSTLATQPIPAKWAAGPLSSEQLSLELHQVEREIG
KRTREIAMESQGPHDVQFKMKTSENGQPDHKVPLEDLSLALSEGPNGSSLVQENSISSLA
SKTSSLSLSADSGSTTDLQKNGVVHSCS
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtacaagctccacaatggacggaatttcttttgtgccccatctgcacgcagacc
tttgaggaaaccatccgcaagcccatcagtctgggctgcggccacacggtctgcaagatg
tgtttgaacaagctgcaccgcaaagcctgtcccttcgaccagaccactatcaacaccgac
atcgagcagctgcctgtcaactctgcgttgctgcagctggtgggcggacaggtgcccaaa
cagcagcccatcacgctgttaacaggagcagaagacaccaaacactatgatgaagcacgg
aagtgtgtggaggagctcgctctctacctcaaacctctcagcagcacccgaggtgtcggg
ctgaacagcaccactcagagcatgctgagccgccccatgcagaggaaactggtgacgcta
gtgcactgccagctggtggaggaggaggggcgcatcagagccatgcgggctgcccgttcc
cttggcgagaggacagtaacagagctcatcctgcagcaccaaaatccacagcagctatct
tccaacctgtgggcagctgtccgtgcaaggggctgccagttcctcgggcctgcaatgcag
gaagaggccctgaagctggttctgctcgccctggaagacggctcagctctgtcccggaag
gtcctggttctgtttgtggttcagaggctagagccacgcttccctcaggcctcaaagacg
agcattggccatgttgtgcagctcctttatcgggcgtcctgtttcaaagtaaccaagaga
gatgaagactcctcactgatgcagctgaaggaggagttcaggacgtatgaggcccttcgg
cgcgagcatgactcccagatcgtccagatagccatggaaggtggactgcgcatcgcccca
gaccagtggtcttcactgctatatggggaccagtcccataaatcccacatgcagtctatc
atagacaagttgcagacgccagcatcatttgctcagagtgttcaggagctgaccattgca
ctgcagcggactggggaccctgctaacctcaaccgcctcagaccacacctggaactgctg
gctaatattgatccgagcccagatgcacctcctccaacatgggagcaactggagaagggt
ctggtggctgtgaagacagtggtacatgggctagtggacttcatccagaaccacagcaag
aaaggcactgaccagcagcagccgcctcagcacagtaaatacaagacctatatgtgccga
gatatgaagcagaaaggggggtgccctcgtggagcaagctgcactttcgcacattctcag
gaggagctggaaaagtatcggaagatgaacaagcgtctggctgcacggcggaacatcagc
cagtcgctcacccagctgaacgattcatccctactgcccgacgatggggggttagacggc
agtgtgcggaaatcctcacctatggccaacggcatcatagcagtgggctcaggcagcacc
ctcacacagctcatctcccgtggcacagagcctccctatgaccctgggcgcaagccagga
aagatggacagtctcagtgccccaggatccccccctgactcgttggactctgtccccaag
aatactctgtcgaccctacctatgaatcctcagcacatgacgcatgcccggatgcccaca
gaccacccctcaatgcacaagcaagtgtccgtagtgcccagggcccctcagatgtaccca
cagcagcaacctgaaattttctaccaagagcctcggccacctccctcctcgtcccagtac
gaaaccactgcacagtaccgcacaggtaatccgtacacataccagcctccacagtatgtt
cagccacgctatgtgcagcctggacagagtgagccgggcatgccctaccaagatccctac
ccctatgtgccagaaaggcagtaccccagccctcctgcccagtacccagcccagccagtg
taccagacgcactatgatagccgccgcccctacgcatccacacagtcctaccagcgtgac
gacatggtgaggcacagccctgtgcctgtggacatgccccctcctgctgctggctcacca
tacttgactgattcccgagagcggtacctccccgaaggctactgtccagtgggcccgcac
ccaggccagatgaggtcctatcctagggatccttacaacaggacatcccagcctagcctc
gattacctgcatcgccgccgtaaggagatcatggcccagctggaagagaggaaggtgatc
tctccccctccctttgccccatcaccaacgctgccccactccttccccccggatttcccc
caggagtacatggaggagaactccaaggcttttgggaaatgcacacgtgaacatgacctc
actggccagtattcaccctggtcgtgcgataccattggctcctacattggcaccaaggac
ttgaagcccaaagaaatcatggcatcaggcaccatggagatgatgaatgtggacagcaag
ggtttgagagagcagcagttggacatgcagcgaaggtcagctgaggccaaagacgatgac
cccatcattccgtttggccccctgccaaccgtctctcgctttggggctatctcacgcacc
tccaaaacaggctaccagaccaccgggccagtacaagccatgacctctacccaggcccat
ggtagcgcagctaccaaacacgtccctgtggcagctgactacacgtatgagaaccacaga
gggtggggaggagcctcttaccaacaacaccaaaccgtgacgtctcagggacacttcagt
gaaaggccaccaatgcctccacctgacagggagcagctgaagatggagctccagcaagtc
aaccagcagatcagccagcagacgcagatccgtggactggaggctgctagtaacaccatg
ctgctgcaaagagagccgagcaccttggccactcagcccatcccggcaaagtgggcagcc
ggacccctgtccagtgagcagctgagcctagagctgcaccaggtggagcgggagattggc
aagagaacacgggagatagccatggagagtcaaggacctcatgatgtgcagtttaaaatg
aagacgtctgaaaatggacagcctgatcacaaggtacctctggaggacctctctcttgcc
ctcagtgaagggccaaatggatccagcctggtccaggagaacagcatctcctctttggcc
agcaagacctcctccctcagcctgtctgccgactcggggagcaccactgatctacagaag
aatggggtggttcactcctgttcctag
DBGET
integrated database retrieval system
