Lepisosteus oculatus (spotted gar): 107076983
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Entry
107076983 CDS
T07349
Symbol
alms1
Name
(RefSeq) Alstrom syndrome protein 1 isoform X1
KO
K16741
alstrom syndrome protein 1
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
loc03036
]
107076983 (alms1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
loc03037
]
107076983 (alms1)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
107076983 (alms1)
Cilium and associated proteins [BR:
loc03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
107076983 (alms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
107076983
NCBI-ProteinID:
XP_015199347
LinkDB
All DBs
Position
LG4:complement(3101732..3131896)
Genome browser
AA seq
2806 aa
AA seq
DB search
MELHEAAAGSDSTPIATTPPASPASRLSRAEELRSQSSSPGSGTHLSSTSGVSLGEAIVQ
RAKQGMESWYQLPAEGDVSRLTAASVTRLDQPSWPAEEHTAPDSPPPQAGMISTADEARQ
HQAKEVQASQLAFQDSRLSPALPLLPGKATSLPDDTFFQQTGLEFAPLRGSPDISVMSER
FARPLQMSDAIQLAITEVSEDFPGDHPSLSQHPLAVTTVMGDDASSVCSLSQHTLSPSST
DEGVSNCEKAPEEEMEEDRFSRLQVSLSRAEEQQDPAAEKHASSVASLLDKVVHGPLEDD
GSFLNSDVPAPLLLELLEKEVGLSSSGTSSSTSGNSSSQIEVVVSQGLNTGHSEHFIEES
VEKDIAPDGSGEDSVVPKPDLSRSSLEQESFRVSRDLSPGKTSFSSTKPAENTKDKAELN
ESDRCEKSNITTRSSHTKSYDELSDAPCEQLCSESIFRPFQSLSDSRKVQKDPLPPNSET
VTPNTGSLGTYSGKDSIITAVPTGIGKTEISLSSGFSCEKGQKETELSNSGSHMAVEGSF
LGSLAQPISHSTPGVIAGIPRASVQPASAKLSPIESNLEASAEAPHCSSSDTGLAPSSLK
DVEEPTRIVSGTGVVNVASHQTTRKIHSLPALNYMEKVGAWNVTQSTGKTFFDHLALKGF
TGVSPKKKAYDAIADSLNHIFSQQKSDKTPLPSTSNISSRSPRRNLAASFSGTSSPAKET
PGSAGGLGRSLSYTSVSTVAKEVQQAGAPECAKMEESRSEFGQKKHCASAEEAASTSVAQ
DSSADRSAHMVVRKNVSESYNVPLLTEPLVLSEKGLSTSTDKDRCCTQRVKQGKLLELEN
SSQPPSQVSLGRFSDVSASQDLSNTLASSQDTVPSYRGQRRQSASTGAVSVSSPVSLEVD
NYAPYWATNPSTPARNKELNIEERIPMYLQNLGIDQSPSTILTPFVPKGPIREPEFSPTD
LRTIKGSTGTPTKSTQPSEGGSPAKGDFSQSSLFSVNSTSLSVPLSSDVDRESPLHAESS
VQNVAESSSDKPVSQCSLQTAFHPLDRSLDLRGKQPSDDTSQCKETISAEPFSSSEARQR
LNGNSDHVISSRVQKRVSQFQPGEMCVTPDSLSSSSSLAENEQQTGPQDTEQKEAYYFPK
VTHTPPRCSLDLGNDSFVGTKTLQEIRKLLGQAESIVSGRSSFSSPSASLRGSEDLSSFL
QKNLDSFHDSLASSEENHESHSSLLWRKSSSDSMLTLDGLKGSSWQEVLQSPRASASRSV
ITAEHERVSSVKTAESTFLSDASKEFTQGRTCSVFTAKNVRRSEPEGCSEATQDKVVSVP
GPVAHSTEASIKAVDAGDRHRDPTPELALPNPSVNGVPAESSHSSDGREGARAAAGEDSS
SVDSLAGRVAALLKNESPATVASGVVSEADEEERRARDWIKLKVSGEQCEPLELNMEDRQ
KIEEIKAELLRNTKKPSGAIKGQWSTDTDSDTTSSTVAVTGVLPSLKPTEEFCALNTAKH
QISSQLQKLSSNPFNTSVELHTPLRKDMEARIREIAQREGLSASQQVAHETGRPIVSITF
SSRKRSPSPASLSPLLSRASDVADHTSVTRDEDSLVEPVRLTELDRRQAGSLQPLTATKE
EVQKVRYSHQGPGKGQPYTGKCSGTDVEDAVSEVENISSTQRPVAVSESGFCSNNPVCLR
NNACTGQGEVDSLTEPDVNSGKDDLTLCSTSGYGFHHYQLGFDAHVESDLKPPEVCGSQT
EEQRQGSPGTTNDSPFVVLQHAVHKSPGAHFHVNATRYRQLSTSTPNIALEENASASLKP
SALPLQVSSFASGSSSVSSPTKKVLSYVHVTLSPKPSNEKSMSTDDRHFQFGTFPPESDY
AEFLKTSASENPSDTNTPSAIQGHSYTDGTQSTEGIYDTHSPITGETSHVRGRVAQTVRG
NCPESTVRQEHLRKNQERYRQHLNENMLVGQMKPRSADASAQITTHVPGLSSESTRPSST
LSKSRSPAQQPQDLPVQTSAQPVLVPYKPRGSQKVFYIPQSRAQVSQTHSDTTMESSHPG
SDDAIPPKFTVEILGARNKEVDIDVTAKHKEGIYSKTAQSKTRWEENTGSDIAFHRQQRL
TEYTHQGHSRHPIHPIEYQGFLEKMSADELHSKTTAQNRSPSFSGTFSKGASHPSEEHRR
PEREFSREHLAFSRKHKEDKFSSLEGEVDYTMKELHLHQGLERENLTSTRASWNHIPQEN
PSPLSRDKLATKRNLDNTLRRGDQVSSEHSLHNSNTLDELWEKFKARQSLVKLNNPSGKE
RSLLERLDRLSRLLHNPCHHSFISERETGKGRDRDHGPQKRKKEEVMRRLRENRESHIQQ
AWGEESVEPKEITALQPSKTLKPVRDISTASPLSRHLYLAEREQVDSVTSDTVSESDVAI
QTESGDSSHTETSSTVSTIDTARLIRAFGPQRVNVNPSLNKLYSAIDKQKESLHKKSVPK
KRASKSKKHIDTASPSLCSTEESTVMPDSVSASTCSVPVPRGPSGVLTNKKTVKLLNKGI
QAGDLEIVNSGTKKNTRDVGVTFPSPGSAWAEQTGASRHMEARRDERTSSNSQQFLYEKK
TKKSNPQRHTQGMSWFVPADELKSEAKKENQPSSVSGPGPAWFEPNTRAQPWREPLREKQ
VQDAPVPSSRRSRAQPITEPGAGAKWPTSLVRITLQEALAMCRPDFISRSRERMKRLVLL
AEERRTQAVFDSEREDLFNQLGTRRAWGVAHPNRQPHKELHIQKKRAIPKKEMFIRSKQK
YAQLPEVQQRREEERRRAEYRSYRLKADLYKRKITNRVLGRKTPWQ
NT seq
8421 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcacgaagcggccgcagggagtgacagcacgcccatcgccacaacgcctcct
gcctcccctgcctcgcggctcagccgggccgaggagctgaggagccagagcagcagccca
ggcagtggcacacacctgtccagcaccagcggtgtctctctgggggaggccatcgtgcag
agggccaagcagggtatggagtcatggtaccagttgccagcagagggtgatgtgagccgt
ctgacggcagcctctgtgaccaggctggatcagccctcctggccagctgaagagcacaca
gcccccgattcccccccgccgcaggcagggatgatctccacagctgacgaagccagacag
catcaggctaaagaagtgcaggcttcacagctagcttttcaagatagccgtctgtcaccc
gctcttcctctgctccctgggaaagccacaagcctgccagatgacactttctttcagcaa
acaggattagagtttgcccccctcaggggatctccagatatctctgtcatgtctgaacgg
ttcgcaagaccactccagatgagtgatgctattcaacttgccattactgaggtctctgaa
gactttcccggcgaccacccttcactgtcccagcatccattggctgttaccacagttatg
ggtgatgatgccagcagcgtgtgctctttatcccaacacactctgtcaccatcgtccacc
gatgaaggtgtgagcaattgtgagaaggccccagaggaggaaatggaagaggaccgattt
tcaagacttcaagtatctctgtccagagctgaagagcagcaggatcctgctgcagagaag
catgcctcatctgttgcttccctactggacaaagtggtacatgggccgttggaagacgat
ggttcattcttaaacagtgatgttcctgctcctcttttactggaattgctagaaaaagaa
gttggcttgtcaagcagtggcacatcctcatccacgtctgggaactcttcaagccagatt
gaagttgtggtcagtcaggggctaaacacaggacattctgagcattttattgaggagtca
gtagaaaaagacatagcacccgatggctcgggggaagactcagtggtgccaaaacctgat
ttgtctagaagttccttagagcaagaatctttcagagtgtcaagagatttgtctccaggc
aaaacttcattttcatccacaaagcctgcagagaatactaaagacaaagctgaattaaat
gagtcagacaggtgtgaaaagtccaacatcactactcgctcttctcatacaaagtcatac
gatgagttatctgatgccccctgtgagcagctatgctctgagagtatatttagacctttt
cagtctttgtctgattctagaaaagtgcagaaagatcctttaccaccaaacagtgagaca
gtcaccccaaatactggatccctggggacatacagtggaaaagacagcatcattacagca
gtaccaactggcattggcaaaactgaaatatcattgtcatcaggattcagctgtgagaaa
ggacagaaggagacagagctgtcaaactcaggaagtcatatggctgtggagggatctttc
ctgggatctcttgctcagccaatttctcattcaaccccaggtgtgattgctggcatccca
agagccagtgtgcagccagcttctgcaaagctgtccccaattgagtcaaatcttgaagcc
tctgcagaagcaccccattgcagctcctctgacacaggtcttgctccttccagtttaaaa
gatgtggaagagccaaccagaattgtttctggtactggagtggttaatgttgcttctcat
caaacaacaagaaagattcattctttgcctgctctgaattatatggagaaggtaggagca
tggaatgtgactcagtcaacgggtaaaacattttttgaccacttggcactgaaaggtttc
actggggtttctcccaagaagaaggcctatgatgccattgccgattcattaaatcacatt
ttttcccagcaaaaaagtgacaaaacaccattgccatccacctcaaacatcagcagtcgt
agtcccagaaggaacctagccgcttcgttttcgggaacctcatcaccagccaaagagact
cctggcagtgcaggaggtttaggaaggtccttgtcttatacgtccgtcagtactgtagcc
aaagaggttcagcaagctggagctcctgaatgtgcgaaaatggaagagtctcgctctgag
tttggccaaaagaaacactgtgcttcagcagaagaagcagccagcacctcagttgctcaa
gactcatctgcagacagatctgcccatatggtggttaggaagaatgtgtcagagagttac
aatgttccacttctcactgagccacttgttttatcagagaaggggttgtccacctccact
gataaagaccgatgttgcacacagagagtgaaacaaggaaagctgctggaattggagaat
tcttcccagccaccttcgcaggtgagcttaggcagattcagtgatgtatctgcaagccaa
gacctaagcaacacactggccagttcacaggacacagttcccagttaccgtggtcaaaga
agacagtcggcttcaacaggagcagtctccgtctcctcgcctgttagtttggaagtagat
aactatgctccatactgggccaccaatccttcaacgccagcaagaaataaagagttaaac
atagaagagagaattccaatgtaccttcaaaatcttggaattgaccaatcaccatcaact
atacttactccgtttgtgccaaaaggacccataagagagccagaattttcaccaactgat
cttcgcacaataaagggttcgacaggaaccccaacgaagagcacacagccctcagaaggt
ggcagtcctgcgaaaggagacttttcacagtctagtttgttttctgtgaactctactagc
ctgtctgtgccattgagttctgatgtagatcgtgaatcaccattgcacgctgagtcctct
gtgcagaacgttgctgagtcttcttcagacaaacctgtcagtcagtgcagccttcagacg
gctttccatccactggatcgctctttggatcttcgaggaaaacagccatcggacgatacc
tcacaatgcaaagagaccatcagcgctgaacctttttcatcttcagaggccaggcagcgc
ttgaatggcaacagtgatcatgtgatttcctcacgtgtgcaaaagcgtgttagtcagttt
cagcctggtgaaatgtgcgtcactcccgatagtctatcctcctcctcctctcttgcagag
aacgaacagcaaactggtcctcaggatacagaacaaaaggaagcgtattactttccaaag
gtcacccatacaccaccgcgatgcagcctggatctggggaatgactcttttgttgggact
aaaaccctgcaggagatccgaaaacttttgggccaggcagagagcatcgtgtcaggaagg
tcctccttctcctcgccttcagcatctttaagaggctctgaagacctttcttcatttctg
caaaagaatttagacagcttccacgattctcttgcttcttctgaagaaaatcatgagagc
cactcatcactgctgtggaggaagtcctcctccgattccatgctcacattagacgggctg
aaaggcagttcctggcaagaggtactacagtcacccagggcatctgccagcagatctgta
attactgcagagcacgaaagagtctccagtgtaaagactgcagaatcaacatttctaagc
gatgcctcaaaagagttcacacaggggcgtacatgctctgttttcacagccaaaaatgtg
aggaggtctgagcctgaaggctgcagtgaggccactcaggataaggtggtttcagtgcct
ggtcctgtagcgcattccacagaggcaagcatcaaggctgtggacgctggggaccgccat
cgggacccgacacctgagctcgctttaccaaatccttctgtgaatggagtcccggcagag
agcagccactcctctgacggcagggaaggggcaagggccgccgcaggcgaagacagcagc
agtgtggattccctggcgggccgcgtcgcggctctcctgaaaaacgagtcgccggccacg
gtggcctcaggcgttgtgagcgaggctgacgaggaggagcgcagagctcgagactggatt
aaactaaaggtttctggggagcagtgtgagcctctggaattgaatatggaagatcgacag
aaaatagaagaaatcaaagcagagctcttacgaaacacaaagaaacctagtggtgcaata
aagggccaatggagtacagatactgactcagataccacatctagcacggttgcagttact
ggggtgctgccttcactgaaacctacagaagaattttgtgccctgaacactgcaaagcat
cagatctccagtcagctgcagaaactgtccagcaatcctttcaacactagtgtggagctc
cacactccacttcgcaaggatatggaggcacgtattcgagaaattgctcaaagagagggc
cttagtgcgtctcagcaggtggcccatgaaactggcagacccattgtatccatcaccttt
tcctcccgtaagcgttccccctctcctgcatccctctctccccttctgagtcgcgcgtct
gacgtggctgaccacacaagtgtcaccagagatgaggattctctggtggaacctgtaagg
ctcacagagctagacagaagacaagcaggcagccttcagcccctgacagcaacaaaagaa
gaagtacaaaaagtcagatattcccatcaaggccctggaaaggggcagccatacacggga
aaatgttcaggcactgatgtcgaggacgctgtcagtgaagtcgagaacatttcctcaaca
caaaggcctgtggcagtttcagagtcaggcttctgttcaaataaccctgtctgcttaaga
aataatgcttgtactggacaaggtgaagttgattcactaaccgagcctgatgtaaattct
ggaaaggatgatctgaccctgtgttctacatcagggtatggtttccatcactatcagctt
ggatttgatgcacatgtcgagtcagacctgaaacctcctgaagtgtgtggcagccagaca
gaagaacagaggcaaggctctcctggcaccactaatgacagtccttttgtcgttcttcag
catgctgtacacaaaagccccggagcacattttcatgtaaatgcaactcgatacagacag
ttgtccacatctacccctaatatagccctggaggaaaatgcatcagccagtctaaagcct
agtgcattacctttacaagtttcatcatttgcctctggttcttcttcagtctcttcaccc
accaaaaaagtcctgtcatatgttcatgtgactctgtcacccaaaccatccaatgaaaaa
tctatgtccactgatgacagacattttcagtttggcacttttccaccagagagtgattat
gctgagtttttgaagacgtctgcttctgaaaacccctcagataccaatacaccctcagca
attcaaggacattcatacacagatggtacgcagtcgacagagggtatatatgatacacac
tctccgattacaggtgaaactagtcatgtcagaggccgtgtcgcacaaacagtgcgtggt
aactgtcctgaatctacagtgaggcaagaacacttgcgtaaaaatcaggaacgttatagg
caacatttaaatgaaaatatgcttgttggccaaatgaagcccagatctgcagacgcttct
gcccagataacaacccacgtacctggcctgtcgtccgagtccaccagacctagctccacc
ctttcaaagtccaggtcacctgcacagcagccacaggacctaccagtccagacatcagct
cagcctgtcctggtgccgtataagccccgtgggagccagaaggtcttttacatcccccag
agcagggctcaggtttcccagacacactcggacaccaccatggaaagctcccatccaggt
tcagatgatgctattccaccaaaattcactgttgagattctgggtgccaggaacaaggaa
gtagacattgacgtcacagccaagcacaaagagggtatctacagcaagacagcacagtct
aaaactagatgggaggaaaacacaggttcagacatagcctttcatcggcaacaaagactt
actgaatatacgcatcaaggtcactccagacatccaatacatccaatagagtaccagggc
tttctggagaaaatgagtgctgatgagcttcatagcaaaacaacagcacagaacagaagt
ccttctttcagtggaacattttctaagggtgctagccatcctagtgaagaacacagaaga
ccagaaagagaattcagcagggaacacttagcttttagcagaaagcacaaagaggataaa
ttttcctctctagaaggtgaagttgattacaccatgaaggaactacacctccatcagggg
ttagaaagagaaaacctcacttcaaccagagcatcatggaatcatatcccacaggagaac
ccttctcctctgtccagggataaattggctactaagagaaacttggataacactcttaga
agaggggatcaggtctcttctgagcattctctccacaacagtaacactttggatgagctg
tgggagaagtttaaggcgcgacagagcctggtgaaacttaataatcccagtgggaaagag
aggtccctgctggaaaggcttgatcgcctttccaggctccttcacaacccttgtcatcat
tcatttatttctgagagggagactggcaagggcagggatagagaccatggacctcagaag
aggaaaaaggaggaagtaatgagaaggctgagagaaaacagagaaagccatatccaacag
gcatggggggaggagtctgtggagccaaaagagataacagcactccaaccatctaaaact
ctcaagcctgttagggacatttccacagctagccccttgagtcgccatctttaccttgcg
gaaagagagcaggtggactcagtaacaagtgatacagtgtctgaaagtgatgtagcaatc
caaacagagtcaggagacagcagccacacagaaaccagcagcactgtatccacaattgac
acagcccgcctcatcagagcctttggacctcagagagtaaatgtcaaccccagcctaaac
aaactgtacagtgctattgacaaacagaaggagagtttgcacaagaagtcagtgccaaag
aagagagccagcaagagtaaaaaacatattgacacagccagtccgtcactgtgtagcaca
gaggagtcaacggtaatgcctgactctgtatcagccagcacctgttcagtccctgtgccc
cgaggtccatcaggtgttctcacaaacaagaaaactgttaagttgctcaataaaggaata
caggcaggtgatctagagattgtgaacagtggcactaagaaaaacaccagagatgtaggc
gtgacattcccttcaccgggctctgcctgggcagaacagacaggagcctcgcgccacatg
gaggcaagaagagatgagaggaccagctcaaactctcagcagttcctctatgaaaagaag
acaaagaaaagtaatccacagcgccacactcaaggcatgtcctggtttgtcccggcggat
gagctgaagtccgaggccaagaaagagaaccaacccagctccgtgtcgggccctggccct
gcctggttcgaacccaacactagagcacagccctggagggagcccctccgagagaagcag
gtccaggacgctccagtccccagcagccggaggagcagggcgcagcccatcacagagcct
ggagcgggtgccaagtggcccacttccctcgtgcgtataactcttcaggaagctcttgca
atgtgccgtccagacttcatctctcgatccagagagcgaatgaagaggctggtgctgctg
gcagaggagaggaggacacaagctgtgtttgacagtgagcgagaggacttgtttaaccag
ctgggaaccagaagagcctggggagtcgctcaccccaacaggcagccacacaaagaactt
catatacaaaagaaaagagccattccaaagaaagagatgttcataagatccaaacagaag
tacgctcagctccccgaggtccagcagcgccgagaggaagagaggaggagggcagagtat
cggtcctatagactcaaggcagacctctacaagaggaaaatcaccaaccgggttttgggt
cggaaaactccatggcagtga
DBGET
integrated database retrieval system
