Leishmania orientalis: 92356104
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Entry
92356104 CDS
T10351
Symbol
LSCM4_00080
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
loi Leishmania orientalis
Pathway
loi03022
Basal transcription factors
loi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
loi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
92356104 (LSCM4_00080)
09124 Replication and repair
03420 Nucleotide excision repair
92356104 (LSCM4_00080)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loi03021
]
92356104 (LSCM4_00080)
03400 DNA repair and recombination proteins [BR:
loi03400
]
92356104 (LSCM4_00080)
Transcription machinery [BR:
loi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
92356104 (LSCM4_00080)
DNA repair and recombination proteins [BR:
loi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
92356104 (LSCM4_00080)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Helicase_C_3
Imm63
XPB_C
Motif
Other DBs
NCBI-GeneID:
92356104
NCBI-ProteinID:
XP_067058271
UniProt:
A0A836GG61
LinkDB
All DBs
Position
36:<319631..>321319
Genome browser
AA seq
562 aa
AA seq
DB search
MSCSSSVLEKPFIEVVCSYPAREKLCAECPALLFLVYEHVVAELQAGRRVADVYRGTSRQ
DHLSELLAVRSLSELFERLYSPAPSRSCDDGTASAQFWRQVRVTLEAAWAPPHDTKVRAL
LTQVHGQPRFCFCGPRDAAVPGEGYPLHPVSLERALATSKRFLRTATTCALDGSTDALAD
RQPELRAVLQLARLVPHTSSTTAAAKKEVTPEGLCFCMVSLQHRWWVLVNAALERVVLLT
RAAVDVIADPSGSREVTKPILWQLLAVLSVLDTAHYIFAFPERQQDLAAHHLLARLSEVG
LVYPILSDRRKCFVLSPDFLHAIHWQASAPLSLTFHHHLLRSGNGSGRIGVGDIRREDTD
TIITETNFRLYAYTNDPDLLNILNQFAVLEEVVNENLHCYRVTRDSFAVAMRKGITAMQV
LRFLSLRAHPSMLRRYAERERSSDTASLSSAVRASSSLSFSAPPRHATAPGTHGSSTSVD
AVVTLVVPQSFCDQMRMWESECRRVVFEHRVSLLRNMSPEQQKAVTAYLTDAGEVDGILH
AERGYMVIREEVFERLIAPLLE
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgcagctcgtcggttctggaaaagccgtttatagaagtcgtttgcagctatcca
gcccgagagaaactgtgcgccgaatgtcctgcgctgctgttcctcgtctacgagcacgtc
gtagcggagctgcaggcggggcgacgcgtcgcggacgtgtaccgcggcacctcacgacag
gaccacctgagtgaattgctcgctgtgcgctccttgtcggagctgttcgagcgcctttac
tcgccggccccgtctcgcagctgcgatgacggcactgcgagcgcgcagttctggaggcag
gtgcgcgtaaccttggaggcagcatgggcgccgccgcacgacaccaaggtgcgtgctctt
ctcacgcaggtgcacgggcaaccacggttctgtttttgcgggccgcgcgacgccgcggtg
ccgggcgagggctatccactgcaccccgtctccctggagcgggccttggcaacgagcaag
cgctttctccgcaccgcgacgacctgcgctctggacgggtcaacggatgccttggccgac
cgtcaaccggagctgcgcgcggtgctgcagctggcacgccttgttccgcacacttcgtcg
acgacagcggcagctaagaaagaggtcacgccggagggactttgcttctgcatggtgtct
ttgcagcatcggtggtgggtgcttgtgaacgcggcgctggagcgcgttgtgctgcttaca
cgcgctgccgtggatgtcatcgctgaccccagcggcagccgagaggtcacgaaaccgatt
ctgtggcagctgctggcggtcttgtctgtgctcgacacggctcactacatctttgcgttc
ccagagaggcagcaggatctggcggcccaccatcttctcgcccggctctctgaggtcggg
ttggtttaccccattctcagcgaccgtcgaaagtgctttgtgctgagtcctgactttctt
cacgccattcactggcaagcgagtgcaccgctgtccctcaccttccaccaccatctcctg
cgcagcggtaacggctccggcaggatcggcgtcggcgacatacgtcgcgaggacacggac
accatcatcaccgaaacaaacttccgtctgtacgcgtacaccaacgaccccgacctgctt
aacattttgaaccagttcgccgtcctggaggaagttgtaaacgagaacctccactgctac
cgcgtgacgcgcgacagctttgccgtcgctatgcgcaagggcatcactgccatgcaagtg
ctacgctttctttctctgcgagcgcaccccagcatgctgcgccggtacgcggagcgggag
aggagcagcgacacagcgtcgctgtcgtccgctgtccgcgcctcctcgtctttgtccttt
tcagcgccgcctcgtcacgcgaccgcgcctggcacgcatgggagttccacgtccgttgat
gctgtggtgacgctggtggttccgcagtctttctgcgaccaaatgcgcatgtgggaaagc
gagtgtcgtcgtgtcgtgtttgagcaccgcgtctctctactacgcaacatgtcacctgag
cagcagaaggcggtgacggcgtatcttactgatgcgggggaggtcgacggcattctgcac
gccgagcgcggctacatggtgattcgagaagaggttttcgagcgccttatagcaccactt
ctggaatga
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