Leishmania orientalis: 92357034
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Entry
92357034 CDS
T10351
Symbol
LSCM4_01035
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
loi Leishmania orientalis
Pathway
loi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
loi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
92357034 (LSCM4_01035)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loi03019
]
92357034 (LSCM4_01035)
Messenger RNA biogenesis [BR:
loi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
92357034 (LSCM4_01035)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
92357034
NCBI-ProteinID:
XP_067059750
UniProt:
A0A836KJH0
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Position
34:1320038..1322260
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AA seq
740 aa
AA seq
DB search
MSSKVDDVILPSTKDVVSAVFGPVKEYSKLSAQLPLDDYDYHLAFPGFRKRIRDDSETLV
ALMDACTQMLPKRRRSSFSSEEDPRSGALHLVETERNAVMEAIDSLLENVDSLLDEVKGR
KLDAQEQLSITFGCELTASSHRDGVAEVDGATSAHGAVRRVAHIRRPQLLFDIPVDNSLA
PFVPHYCDASGQSHVGVAGKHPFEAIIKDFAIPESQLLPRAEVPPVPLDACPLTFVDTPA
ALQAMVEKLLLSSEIAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLQLRSSMGALAPV
FLSPAILKVLHGSREDIRWLQKDFSLYVVNLFDTGVALQTLHMPHSLAFAVDHFCQVKLN
KKYQTADWRMRPLSAEMVHYARQDTHFLLYVYDRLKALLFNSEARASIGSLLAHVYNESK
RLSLQLYEKPNVVPEETYKIALGRSLSGLSKLQEKVARDVFNWRDSAAREVDDSPTAVLH
LSSVLAIASKLPTTAKELLGCCAPATAVVRDNVALLVDLVKEAVASSEGDVAAKAHVGSA
NGEFAENRDRGARTAANKEWAFYRSLCPTGVHRPMTGTLPSLASVVKTVAPTEVPEEECS
MLLSHSTPSPWFNAMQALSHALANRPLQHVDLPGSDVFAARQAAAAASAAAAQAVKGSVW
EDKEREAVARSRSSSVGKLSREAEAEEESKAEVTATPEAEVKHASVIPVDQRAFSIKQEY
GIGAKTQIVKARKGNTRRKE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaaggtagatgatgttattcttccctcgacaaaggatgttgtttctgctgtc
tttgggcctgttaaggagtatagcaagctctccgcgcagcttcccctggacgactacgat
tatcaccttgcctttccaggatttcgcaagcgtattcgcgatgatagtgaaactctggtt
gcgctgatggacgcatgtacgcagatgctgccaaagcggcgtcgcagcagtttctcctcg
gaggaagatccgcgcagcggcgccctacacttagtcgagacagagcgtaacgcagtgatg
gaggcgattgactcgctgctagaaaatgtcgactctctgctcgacgaggtgaaagggcgt
aagctggacgcacaggagcagctatctatcacctttggctgcgagttgactgcctcgtca
caccgcgacggggtcgcggaggttgatggagccaccagcgcgcacggggctgttaggcgc
gtggcccacatccggcgcccgcaactcctttttgacatcccggtggacaattctttggcg
ccgtttgtgccgcactactgcgacgcatccgggcagtcacacgttggtgtcgctggaaag
catcctttcgaggctatcatcaaggacttcgccatcccggaatcgcagctgcttccgcgg
gcggaggtgccgccggtgccgctggacgcctgcccgctcacttttgtggacacgcccgcg
gcgctgcaggcgatggtcgaaaagctgttgctctctagcgaaatcgccgtggacttggag
caccacgacttttacagctatcagggcttcacatgcctcatgcaaattagcacccgcgag
gaggacttcattgtggactgcctgcagctgcgctcttcaatgggggcgctggcgccggtc
ttcttgagcccggcgattctgaaagtgctgcacggctcgcgagaagacattcggtggctg
cagaaagacttctccctttacgtggtgaacctcttcgacaccggcgtagctctccagacg
ctgcacatgccgcacagtctcgcgttcgccgtcgaccatttctgccaggtgaagctgaac
aagaagtaccagacggctgactggcgtatgcggccgctgtcggcagagatggtgcactac
gcacgtcaagacacgcactttctactatacgtctatgaccgactcaaggcactgctcttc
aacagcgaggcgcgcgccagtatcggcagcctgctggcgcacgtctacaatgaaagcaag
cgactctccttacagctttacgagaagccgaacgttgtgcctgaggagacatataagatc
gcccttggccgaagccttagtggactaagcaagctccaggaaaaggtcgcgcgtgacgtg
ttcaactggcgggattcggcggcacgtgaggtggatgattcacccacggctgtgttgcac
ctgtcctcggtgctggcgattgcatctaagctgccaacaacagcgaaggagctgctggga
tgctgcgcgccagccacagcggtggtacgcgacaacgtcgctctcctggtggacttggtg
aaggaagccgtggcgagtagcgagggtgacgtggcggcaaaggcgcatgtggggtcggcc
aacggagaattcgcggagaacagggacaggggtgcgaggacggcggcaaacaaggagtgg
gcattttaccgctccctctgccccacaggcgtgcaccgtcctatgacaggaacgctacct
tcattggctagtgttgtgaagacggtggcaccaaccgaggtgccggaagaggagtgctcc
atgcttctctcgcactccacgccgtcaccgtggttcaacgccatgcaagccctctcacat
gctctcgccaaccgccctctgcagcacgtcgaccttccgggctcggacgtgtttgccgcc
cgccaggcagcggccgcagcctccgcagcagcggctcaagcggtcaaggggtctgtatgg
gaagacaaggaacgagaagcagtcgctcgcagtcgtagctcgagcgtcggcaaactgtcg
cgtgaagcggaagcggaagaagaatcgaaggcggaggtcactgcgacaccggaggccgag
gtgaaacacgcatccgtcataccagtggaccagcgggccttctccatcaaacaggagtac
ggcattggggccaagactcaaatcgtaaaggcccgcaaaggaaatacaaggcgaaaggag
tag
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