KEGG   Leishmania orientalis: 92361755
Entry
92361755          CDS       T10351                                 
Symbol
LSCM4_05891
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
loi  Leishmania orientalis
Pathway
loi03013  Nucleocytoplasmic transport
loi03015  mRNA surveillance pathway
loi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:loi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    92361755 (LSCM4_05891)
  09122 Translation
   03013 Nucleocytoplasmic transport
    92361755 (LSCM4_05891)
   03015 mRNA surveillance pathway
    92361755 (LSCM4_05891)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:loi03019]
    92361755 (LSCM4_05891)
   03041 Spliceosome [BR:loi03041]
    92361755 (LSCM4_05891)
Enzymes [BR:loi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     92361755 (LSCM4_05891)
Messenger RNA biogenesis [BR:loi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     92361755 (LSCM4_05891)
Spliceosome [BR:loi03041]
 Complex C
  Other components
   EJC/TREX
    92361755 (LSCM4_05891)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    92361755 (LSCM4_05891)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 92361755
NCBI-ProteinID: XP_067063594
UniProt: A0A836HEG7
LinkDB
Position
21:complement(<633947..>635527)
AA seq 526 aa
MCTYDCPTHRCVSVCVCACVCVCVYTRTPILSYSRISTTATKRTTASSITTTIEHPSKQR
HQYNAHPSTPRHRLSLLPSFPPPSCRLDWAIMSSDLADFDGDDVRTTVVAAQPMGVGMGT
HSAVALGGFQDFCLKSELANAIRENGFEHPSEVQHQALPKAMLGADILAQAKSGMGKTAV
FVFALLEQVEKVPQGQKPYCQAVVLVHARELAYQIEQEFKRFSKYLPYATTGVFFGGIPE
DENVKQLKKEVPAIIVGTPGRMKALVQSKAFDTTHVKWFVVDEFDRCLEDVKMRRDVQEI
FMKLPKEKQVMMFSATMTDELRDVAKKFMKDATEIYVDQRAKLTLHGLAQFYMNVTEMEK
TRRLAEILDVVEFNQAIIFTSSVERCEALNRQLQQMKFPSQAVHSRMNQEERLRVYESCK
VNNTRIMVATDLFGRGVDFDRINLVVQYDMASEADSYLHRVGRAGRFGTKGLTIAFITTD
EKEIKRENRTYTDGGVMKEVQERFEMKVEELTDINSQLNENQYMNK
NT seq 1581 nt   +upstreamnt  +downstreamnt
atgtgcacatatgattgccccacccaccgttgtgtctccgtgtgtgtgtgtgcgtgtgtg
tgtgtgtgtgtgtacacgcgcactcccatactctcctactctcgcatctctaccaccgca
accaagagaaccaccgcatctagtataacaacaacaatagagcatcccagcaaacagcga
catcagtataacgctcacccgtccacaccacgacatcggctatcgcttcttccatccttt
cctcctccctcgtgccgtcttgattgggcgataatgagcagcgatcttgcggacttcgac
ggcgacgatgtgaggaccaccgtcgtggccgcgcagccgatgggcgtcgggatgggcacc
cacagcgccgttgccctcggcggctttcaggacttctgccttaagagtgagctcgcgaac
gccatccgtgagaacggcttcgagcacccgtcggaggtgcagcaccaggcgctgcccaag
gcgatgcttggcgctgacattcttgcccaggccaagtcgggtatgggaaagacggccgtg
ttcgtctttgcgctgctggaacaggtggagaaggtgccgcaggggcagaagccgtattgc
caggccgtcgtgctggtgcacgcccgcgagttggcttaccagatcgagcaggagttcaag
cgcttcagcaagtacctcccgtacgccaccacgggtgtcttctttggcggcatcccggaa
gacgagaacgtgaagcagctgaaaaaggaggttccggcgatcatcgttggcacgccgggc
cgcatgaaggcgctcgttcaaagcaaggccttcgacacaacgcacgtgaagtggtttgtc
gtggacgagttcgaccgctgcctagaggatgtgaagatgcgccgtgatgtccaggagatc
ttcatgaagctgccgaaggagaagcaggtgatgatgttctccgccacgatgacggatgaa
ctgcgcgatgtggctaagaagttcatgaaggatgccacagagatttacgtggaccagcgc
gcaaagctgaccctgcacggcctggcacagttctacatgaatgtcacggagatggagaag
acgcgccggctggcggagattctcgacgttgttgagttcaaccaggcaatcatctttacg
tcctcggtggagcgctgtgaagcgttgaaccgccagctacagcagatgaagttcccgtcg
caggccgtacactcccgcatgaatcaggaggagcgcctccgtgtgtacgagagctgcaag
gtgaacaacacccgcatcatggttgccaccgaccttttcggccgcggcgtcgactttgac
cgcatcaacctcgttgtgcagtacgacatggcctccgaggccgacagctacctgcaccga
gtcgggcgcgccggtcgctttggcacgaaggggctgacgattgcgtttattacaaccgac
gagaaggaaatcaaacgcgaaaaccgtacctacacggatggcggtgtcatgaaggaggtg
caggagcgcttcgagatgaaggtcgaggagctgacagacatcaacagccaactgaacgag
aaccagtacatgaacaagtaa

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