KEGG   Leishmania orientalis: 92362611
Entry
92362611          CDS       T10351                                 
Symbol
LSCM4_06764
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
loi  Leishmania orientalis
Pathway
loi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:loi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    92362611 (LSCM4_06764)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:loi03021]
    92362611 (LSCM4_06764)
   03019 Messenger RNA biogenesis [BR:loi03019]
    92362611 (LSCM4_06764)
Transcription machinery [BR:loi03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     92362611 (LSCM4_06764)
Messenger RNA biogenesis [BR:loi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     92362611 (LSCM4_06764)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 zf-CCCH_2 zf-CCCH_4 Torus zf-CCHC zf-CCCH_3 zf-CCCH_9 zf-CCHC_2 zf-C3H1
Other DBs
NCBI-GeneID: 92362611
NCBI-ProteinID: XP_067065388
UniProt: A0A836GQ08
LinkDB
Position
9:complement(343865..344875)
AA seq 336 aa
MFVDDAAGTHFDFEDTLPKVQPRTEKKLEICQDFQRGRCRFGDTCPQRHIISAYRTVQTK
VCKHWLRGACVNGDNCLYLHEYDNRYVPQCAFFERVGECTNPECPFLHTRPNESLPECAA
YRRGFCPMGPSCRLRHVKRESACPYYLAGFCPLGPRCPLGHPIQERYDRDAVSKRILAKM
IVERADDPTFNRSATCYRAGCFDPGHLAPDCPGPQHSVLHKALGEIQEPGQPIGTLENGG
RGSGGASHRRCFLCDEEGHTMKDCPTNTHRNQHRSGGSGGPGAPQGNSGGAGIANRRRLR
REGGAGVGGGPSGGGGGGGTGFGGGGGRRRPGRDHG
NT seq 1011 nt   +upstreamnt  +downstreamnt
atgttcgttgacgatgccgccggcacgcacttcgactttgaagacacgctgcccaaggtg
cagccccgcacggagaagaagctagaaatctgccaagacttccagcgcggccgctgccgt
tttggcgacacctgcccccagcgccacatcatctcggcttatcgtaccgtgcagacgaag
gtatgcaagcactggctgcgtggtgcctgcgtgaacggggacaactgcctttaccttcac
gagtacgacaaccgctatgtcccgcagtgcgccttctttgagcgcgtgggcgagtgcacc
aacccggaatgccctttcctgcacacgagaccaaacgagtcgctgccagagtgcgccgca
taccgccgcggcttctgcccaatgggccccagctgccgccttcgacacgtgaagcgggaa
tcggcgtgcccatactacctcgctggcttctgcccgttaggcccgcgctgtccgctgggg
caccccatccaagagcgctacgaccgcgacgccgtctcgaagcgcatcctggccaaaatg
attgtggagcgcgccgatgacccaaccttcaaccgcagcgcaacctgctaccgagccggc
tgctttgaccctggccatctcgcgccggactgtccaggtccgcagcacagcgttctgcac
aaagctcttggcgagattcaagagccagggcaacccattggcactttggagaatggtggg
cgcggcagtggcggcgcctcgcatcgtcgctgcttcttgtgtgacgaagaggggcacacg
atgaaagactgtccgacaaatacgcaccgtaatcagcaccgcagtggagggagtggcggt
cctggcgccccacaaggcaatagcggtggagctggaatagctaaccgacggcgcttgcgg
cgagaaggcggtgccggcgttggaggcggccctagtggtggtggtggtggtggtggtact
ggcttcggtggcggaggcggtcgacgacgccccggtcgcgatcacggctaa

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