Leishmania orientalis: 92363537
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Entry
92363537 CDS
T10351
Symbol
LSCM4_07724
Name
(RefSeq) hypothetical protein
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
loi Leishmania orientalis
Pathway
loi03008
Ribosome biogenesis in eukaryotes
loi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
loi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
92363537 (LSCM4_07724)
09123 Folding, sorting and degradation
03018 RNA degradation
92363537 (LSCM4_07724)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loi03019
]
92363537 (LSCM4_07724)
03009 Ribosome biogenesis [BR:
loi03009
]
92363537 (LSCM4_07724)
03016 Transfer RNA biogenesis [BR:
loi03016
]
92363537 (LSCM4_07724)
03036 Chromosome and associated proteins [BR:
loi03036
]
92363537 (LSCM4_07724)
Messenger RNA biogenesis [BR:
loi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
92363537 (LSCM4_07724)
mRNA degradation factors
5'-3' decay
5' exonucleases
92363537 (LSCM4_07724)
Ribosome biogenesis [BR:
loi03009
]
Eukaryotic type
Pre-60S particles
RNases
92363537 (LSCM4_07724)
Transfer RNA biogenesis [BR:
loi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
92363537 (LSCM4_07724)
Chromosome and associated proteins [BR:
loi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
92363537 (LSCM4_07724)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
SH3_12
XRN1_D2_D3
Motif
Other DBs
NCBI-GeneID:
92363537
NCBI-ProteinID:
XP_067065733
UniProt:
A0A836KUA1
LinkDB
All DBs
Position
6:complement(100675..105189)
Genome browser
AA seq
1504 aa
AA seq
DB search
MGVPKFFRWAAERFPSIITPFKDSPPPVDNLYLDINGIIHNCTHPNDVDATRRSPTEKEM
IQAMFIYLEKLFNAIQPRKYFLLAVDGVAPRAKMNQQRQRRYRAGYEMMIAREEALAMGE
EVPEEKDVFDSNCITPGTPFMVRVSKAFQYFITMKLSTDPAWQGCEVIFSGHDCPGEGEH
KIVDFIRRRKMQPNYDPNETHCMYGLDADLVMLALATHEPHFVLLREVVTFGPGSRKERE
RQEEDEAKGLVKDKAYHKADEFVLLHINVFRDYLQLEVKGCLAKAKSSASVDFERVIDDF
VFMCFFIGNDFLPTLPTIGINDGSIPVILRLYVDNLLSKNKYLTHKGEIDWRNAEVWLNE
VGKLEFETLRRRQQEEAEYQKNRARRDPTHEVDTASAIPITSILEFKQRYYGEKHGFAGG
WDANGNDMRQLREHYVEGLMWVMHYYYQGVPSWKWFFPHYYAPMASDMVNLPAIASRVSF
ELGKPFQPHQQLLAVLPPMSYLSMPKAYWPLLRSPSSPLAKYLPEHIVIDREGARAPWEG
IVLIPFIDERTLLAAYESVQKNVSPEDAANNVNGPPLRFFYDSKMTPYDVMDEMFGPLRN
VFVKRETYAFPHIDKFVPQLCPGVYVGTRQLEGFSTLQSKRDLILPIFETGVVTIFGRPT
KNDSLILQLRDFFKAKSVDQVATLVGKEVLVGFPHYKRARIASVKDVHKCITASYSKEGT
FSGTEEHKNNRDESAAFVKEADTHARFMKSQLGLAVEQVDVLVYVHRFNGMQVTRKGHIE
RHFATTWTCYPIQLVCTLDSMDMKEDSRYVERYRSEDDSAFGARCAYIGPQPKSKKSQVD
VYGSCGTVVTAGQHDTTTQQGDQLTVRLKVFQEPLRLPAELLQYAAQRNWTALPQVATTL
DILPHTLTSICSSIVTSPQFGSRELGLCLKFTGRCLAKVGYAKLVQHSLNPWYVGNKDIF
ARLEKDTEDIGYHVEMAEKSDAVGNSNSNRGGSGTWYFSRDAQELIRDYVRRFRPLIQYM
EAGGVNSNSVEPQHFLTGKWRDRDADEVLTEIETFLADSGLRETPMITATEEAFPQQQLE
QLETSLQEQQNRSFKELSLRQVSRNQLYFPVTRSSGGHLVPLPLPQEQTFYLGSRVVNCR
ATGTVPFGAQGTIVRLLASGREAEVVYDTPFTGGTRLDGRLKDTRAAITKLSALLVLKPT
DAPQPQPQQLPDARAAAATATDGSAKLRELEFLLQANGIHVDASGKSAASPPSLPEAFQS
PAVASARSAPADSAASHSSTAGASASVVPRPRSAAATGQTQASATPGKRATPASATAHLS
SSAPLVAPITRETHGSPASLKITAASGSSGISLQDLAKHLPSSTAQSSPVLTASPTGNAP
ASAAAPAATSITIPAPKSAQQQQQQQQHSVQPASPAVSAPATASAAAATSPKRSSESKET
PPDSAARRKSRDLHVIPDDFVSGRFKIKYTNTGSLFRSWLDTFTAEAVRKTLAELEAEEK
VNPV
NT seq
4515 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttcccaagttcttccgctgggcggcggagcgcttcccctccatcataaccccc
ttcaaggactctccaccgcccgtggacaacctctacctcgacatcaacggtattatccac
aactgcactcacccgaacgacgttgatgcgacgcggcgcagccctacagagaaagagatg
atacaggccatgttcatctatctcgagaagcttttcaacgccattcagccgcgcaagtac
ttcctgcttgctgtcgatggcgtcgcaccgcgcgcgaagatgaatcaacagcgtcagcgc
cgctatcgtgccggttacgagatgatgatcgcgcgtgaggaggcgctggcgatgggtgag
gaggtgccggaggagaaggacgtcttcgacagtaactgcatcacccctggtaccccgttc
atggtgcgcgtgagcaaggcgtttcagtacttcatcacaatgaagctgtcgactgatccg
gcgtggcaggggtgtgaggtcatcttctctggccacgactgccccggcgagggcgaacac
aaaatcgttgacttcatccgccggcgcaagatgcagccaaactacgaccccaacgagacc
cactgcatgtacggcctcgacgcggatctcgtcatgctggcgctcgccacgcacgagccg
cactttgtgctgctgcgcgaggtggtcacgttcggtcccggatcccgcaaggagcgggag
cggcaagaggaggatgaggcgaagggcctcgtaaaggacaaggcgtaccacaaggcggac
gagtttgtcctgctacacattaacgtcttccgcgattacctccagttggaggtgaagggg
tgcctggcgaaagcgaagagcagtgccagtgtcgacttcgagcgcgtcatcgatgacttt
gtgttcatgtgcttctttattggcaacgacttcctgccgacgctgccgactataggcatc
aacgatggcagcataccggtgatcctgcgcctctacgtcgacaaccttctcagcaagaac
aagtacctgacgcacaagggcgagattgactggcgcaacgccgaggtgtggctcaacgag
gttggcaagcttgagttcgagacgctgcgccggcgtcagcaggaggaggcggagtaccaa
aagaaccgcgctcgccgagaccccacccatgaggtggacaccgcctccgcgatacctatc
acgtcgatcctggagttcaagcagcgctactacggcgagaagcacggctttgctggcggg
tgggatgcgaacggcaacgacatgcgccagctgcgggagcactacgtagaggggctcatg
tgggttatgcattactactatcaaggcgtgccttcatggaagtggttcttcccgcactac
tacgcccccatggcgagcgacatggtgaaccttcccgccatcgcttcacgcgtttcgttc
gagctcggcaagccgttccagccgcaccagcagctgctggccgtgctcccacccatgtca
tacctgtccatgcccaaagcctactggcctctgctgcgcagcccgagcagcccgcttgcc
aagtacctcccagagcacatcgtcattgaccgtgaaggcgcgcgcgcgccttgggaaggc
atcgtgctgatccccttcatcgacgagcgcacgttgctcgccgcttacgagtcggtgcag
aagaacgtcagccccgaggacgccgcaaacaacgtgaacggcccgccgcttcgattcttc
tacgacagcaagatgacgccgtacgacgtgatggatgagatgttcggcccgctccgcaac
gtcttcgtgaagcgcgagacgtatgcgtttcctcacatcgacaagttcgtcccgcagctg
tgccccggcgtgtacgtcggcacgcggcagcttgaaggcttcagcaccctccagtcgaag
cgtgacctcatcctgccgatcttcgagaccggcgttgtgacgatctttggccgtcccacg
aagaatgacagcctcatactgcagttgcgcgacttcttcaaggccaagtcggtcgaccag
gtggcgacgctcgtcggcaaggaggtgctcgtcggtttcccgcactacaagcgcgcccgc
atcgcttccgtcaaggatgtgcacaagtgcataacggcctcgtacagcaaagaggggact
ttcagtggcactgaggagcataagaacaaccgagacgagtcggccgccttcgtgaaggag
gcggacacgcacgcgcgcttcatgaagtcgcagctgggcctcgccgtggagcaggtcgac
gttctcgtgtacgtgcaccgcttcaacggcatgcaggtgacgcgcaagggccacatcgag
cggcacttcgcgaccacctggacatgttacccaatccagctggtctgcaccttggatagc
atggacatgaaggaagacagccgctacgttgagcggtatcgcagcgaagatgacagcgcc
tttggcgctcgctgcgcctacataggcccacagcccaagtcgaagaagtctcaggtggac
gtgtacggcagctgcggcacggtcgtgacggctggtcagcacgacacgacgacgcagcag
ggcgatcagttgacggtgcgccttaaggtgtttcaggagccgctgcggctgccggcggag
ctgctgcagtacgccgcgcagcgtaactggacggcgctgccgcaggtggcgacgactctc
gacattttgccgcataccctcacgagcatctgcagctccatcgtcacgtcaccgcagttc
ggctctcgcgagctggggctgtgccttaagttcacggggcggtgcctcgccaaggtcgga
tacgcgaagctggtccagcacagcctcaacccgtggtacgttggaaacaaagacatcttc
gcccgcctagaaaaggatacggaggacatcggctaccacgtcgagatggccgagaagagc
gacgccgtggggaactcgaacagcaaccgcggtggcagcggcacgtggtacttctcccgt
gacgcacaggagctcatacgcgactacgttaggcgatttcgcccactcatccagtacatg
gaggcaggcggcgtcaactcaaacagcgtggagccacaacacttcttgacgggcaagtgg
cgcgacagagatgccgacgaggtactgacggagatcgagacattcttggcggactcaggg
ctgcgcgaaacgccgatgattacggccacggaggaggcttttccgcagcagcagctggag
cagctcgagacatcgctgcaggagcagcagaaccgcagcttcaaggagctctcgctgcgg
caggtgagccgcaatcagctgtacttccctgtcacccgcagcagcggcggccatctcgtg
ccgctgccgttgccgcaggagcaaacgttctatttgggctcgcgcgtcgtgaattgccgc
gccacgggtaccgttcccttcggcgcgcaaggcacgatcgtgcgcctgctggccagcggc
agagaggccgaggtcgtgtacgatacccccttcacgggcggcacgcgactcgatggccgc
cttaaggacactcgcgcggccatcacgaagctgtcggcactgcttgtgcttaagcccacg
gatgcgccgcagccacagccacagcagctgccggacgccagggccgctgcggcgaccgcc
acggacgggtcagcgaagctgcgggagctcgagtttctcctgcaagcgaacggcattcac
gtggacgcctcgggcaagtccgcggcgtcgccgccatcgctgcctgaggcgttccagagc
cccgcggtcgcctcggctcgcagcgccccggcggactctgctgccagccatagcagcact
gcgggcgccagtgccagcgttgtgccgcggccacgcagtgccgccgcgaccgggcagacg
caggcgtcagcgacaccaggcaagcgcgccacccccgcctctgccactgctcatttgtcc
tccagtgcgcctttggtggcgccgatcactagagagactcacggcagtcctgcaagtctc
aagataacggctgcctcggggagcagcgggatcagcctgcaggacttagccaaacacttg
ccgtcttccaccgcccagagctcgcctgtccttaccgcctcgccgaccggtaacgctcca
gcatcggccgccgcgccggcagctaccagcatcaccatcccggctcccaagtctgcgcag
cagcagcagcagcagcagcagcactcagtgcaacccgcttcgcctgcggtgtctgcgcca
gcgacagcatcggcggcggcggcgacctcgccgaagcgaagcagcgagtcgaaagagacg
cctcccgactcggccgcgcgccgcaagtcgcgtgacctacacgtcatcccggacgacttc
gtgagtggacggttcaagatcaagtacacgaatacgggctcgctgttccgcagctggctc
gacacattcacggcggaggcggtgcgcaagaccctcgccgagcttgaggcggaggagaag
gtgaatcccgtgtga
DBGET
integrated database retrieval system
