Legionella oakridgensis: Loa_00383
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Entry
Loa_00383 CDS
T03928
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lok
Legionella oakridgensis
Pathway
lok03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lok00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Loa_00383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lok03021
]
Loa_00383
03400 DNA repair and recombination proteins [BR:
lok03400
]
Loa_00383
Enzymes [BR:
lok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Loa_00383
Transcription machinery [BR:
lok03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Loa_00383
DNA repair and recombination proteins [BR:
lok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Loa_00383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AHE65962
UniProt:
W0BBG3
LinkDB
All DBs
Position
353946..358109
Genome browser
AA seq
1387 aa
AA seq
DB search
MANLGNESMNKAPVMSDLLGLLKQQGQSEEFDAIKIALASPDLIRSWSYGEVKKPETINY
RTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVELALAKVRRERMGHIE
LASPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFEAFVVVDPGMTEMERGQLLNDEAYL
DAMEQYGDEFDARMGAEAIRDLLKQIDLEEEIKSLREELPTTNSETKIKKITKRLKLLEA
FYDSGNKPEWMIMNVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLN
APDIIVRNEKRMLQESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKR
VDYSGRSVIVVGPTLRLHQCGLPKKMALELFKPFIFSKLEFRGLATTIKAAKKMVEREDP
VVWDILEDVIREHPILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQM
AVHVPLTIEAQLEARSLMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRERVNALGEGKI
FASAQEAQNFYEDGYVDIHAKIKIRMSIDKTQTHQLVETTVGRAILADILPKGMPFSYIN
KPMTKKAISKVVDSCYRNYGLKETVIFADQLMYMGFKYATRAGASIGIEDMEIPDDKASI
IEQADNEVREIESQFRSGLLTNGERYNKVIDIWSRTNEMVAKSMMSKIATEEVSNKEGKL
VRQDSFNPIFMMADSGARGSAAQIRQLAGMRGLMAAPDGSIIETPITANFREGLNVFQYF
ISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVITEDDCGTDKGILMQPLIEGGDIVE
PLHERVLGRVVAIDVYIPNEKDPIVTAGTLLDEEWVERLEKIGVDQVYVRSPITCETRFG
LCAKCYGRDLARGHLVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASRATAANNIQVK
NKGIIRLHNIKTVTNDNGNLVAVSRSGELTVADEFGRERERYKLPYGAVLSVHDHSAVEA
GQVIATWDPHTHPVISEVSGKLKFVDLIDGLTMNRQTDELTGLSNIVVIDAKQRGGGAGR
DLRPMVKLVSDDGEDIFIAGTNVPAQYYLPVDAIINFEDGHRVGVGDIIARIPQERSKTR
DITGGLPRVADLFEARKPKDSAVMAEISGVVSFGKETKGKRRLIITASENEAHEELIPKW
RHISVFEGEHVEKGEIVADGPPNPHDILRLLGVGALANYIVNEVQDVYRLQGVKINDKHI
ETIVRQMLRKRTITFPGDSKFLAGEQIEETAMLQENDKLISEGKMPAYGTPMLLGITKAS
LATESFISAASFQETTRVLTEAAVSGKIDDLRGLKENVMVGRLIPAGTGYAYHQRRKAKR
ARIAGAE
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
ttggctaatctaggcaacgaatccatgaataaagcgcccgtaatgagtgatttgctcggc
ttgctcaaacaacaaggtcaaagtgaagagtttgatgcaatcaagattgctttggcttca
cctgatttaattcgttcttggtcttatggtgaagtaaaaaaaccagaaaccattaattat
cgtacgttcaagccagaacgtgatgggctattttgtgccaaaatatttggccctattaaa
gattatgaatgcttatgcggtaaatacaaacgcttgaaacatcgcggtgttatttgtgaa
aaatgcggtgtggaattggctttggctaaggtccggcgtgagcgtatgggccatattgaa
ctggcaagtcctgtggctcatatatggttcttgaaatcacttccatcgcgtattggcttg
ctgcttgatatgacattgagggatattgaacgcgttttatatttcgaagcgtttgtcgtt
gtcgatccaggtatgacagaaatggagcgtgggcagctgcttaatgatgaagcttacttg
gatgccatggagcagtatggtgatgaatttgatgctagaatgggtgcagaagctattcga
gatttgttaaagcaaattgatttggaagaagaaatcaaatcattgcgcgaagaattaccg
acgacaaattctgaaacgaaaattaaaaaaatcaccaaacgacttaaattattggaagcg
ttctatgattcaggaaacaagcctgagtggatgattatgaacgttctcccagtgttgccg
ccagatttgagaccattggttcctctggatggtggccgatttgcaacgtctgatttaaat
gatttgtatcgacgagtcattaatcgtaataaccgtttaaaaagattattagatcttaat
gctcccgacatcattgttcgtaatgaaaagagaatgttgcaagaatctgttgatgcatta
ttggataatggtcgcagaggtcgagctattaccggtactaacaaacgaccattgaaatcg
cttgctgatatgattaaaggaaagcaaggtcgtttccgtcaaaatttgttaggcaagcgt
gtagattattcgggacgttccgttatcgttgttgggccaacgttgcgcttgcatcaatgc
ggattgccaaaaaagatggctttggaattatttaagccatttatctttagtaaattagaa
tttcgcggactcgctacaaccatcaaggccgctaaaaaaatggtggaacgtgaagaccca
gtcgtatgggatatactcgaagacgttattcgcgagcatccaattctattaaaccgtgcg
ccaactttacaccgtttagggattcaagcgtttgagcccgttcttattgaaggaaaggct
attcaattgcatccattggtttgtactgcttataacgcagacttcgacggtgaccaaatg
gcagtacatgtgccactgacgatagaagctcagttggaagcccgctcgctgatgatgtct
accaataatattttgtcgccggccaatggtgaacctattatcgttccaagccaggacgtt
gttttagggttatattatctgacacgagaacgagtcaatgcgcttggggaaggtaagatt
tttgcaagtgctcaggaagcacagaatttttatgaagatggctatgtagacatccacgct
aaaattaaaattcgcatgtctatagataaaacgcaaactcatcagttggtagaaacaact
gttgggcgagctatcctcgcggatatccttcccaaaggaatgccgttttcttatatcaat
aaacccatgacgaaaaaagcgatttctaaagtggtggatagctgttatagaaactatggg
ttaaaagaaaccgttatttttgccgatcagctgatgtatatggggtttaaatacgctact
cgtgcaggcgcttccattggtatcgaagatatggaaattcctgatgataaagcatccatt
attgagcaagctgataatgaagtacgtgagattgaatcgcaatttcgttcaggtttgtta
acgaatggtgagcgatataacaaggttatcgatatttggtcacgaaccaatgaaatggtg
gctaaatcgatgatgagtaaaatcgcaacggaagaagtttccaataaagaaggtaaacta
gttcggcaagattccttcaatcctatttttatgatggcggattctggagcccggggttct
gctgcacagatacgacaattagctggaatgcggggcttgatggcagcgccggatggttcg
attattgaaacacccattacggctaatttccgtgaaggattgaatgtattccaatatttt
atttcaactcacggtgcccgtaagggtttggccgataccgcattaaaaaccgctaactct
ggatatttaacacggcgcttggtggatgtggcacaagatgttgtgattacggaagatgat
tgcggtactgataaagggatattaatgcagccgctgattgaaggtggtgatatcgtagag
ccgctgcatgagcgcgtacttggtcgtgtggtagcaatagatgtatatattcccaatgaa
aaagatcctattgttacagcaggtactttgttggatgaggaatgggtagagcgtttggaa
aaaattggtgttgaccaagtttacgttcgttctccaattacttgcgagactcgttttgga
ttatgtgcaaagtgttatggccgcgatttggctcgtggacatcttgtcaacactggagaa
gcagtaggcattattgctgcacagtccattggtgaaccaggtactcagttaaccatgcgg
acattccatatcggaggtgctgcttcaagagcaacggctgccaataatatccaggtcaaa
aataaaggtattattcgactgcataatattaagaccgtcacaaacgacaacggcaacctg
gttgcggtatcgcgttcaggagaactgactgtagcagatgagtttggccgagagcgagag
cgctacaaattgccttatggtgcggttttatctgttcatgatcattccgctgtagaagca
ggacaagtaatagctacttgggatccacatacgcatccagttatttcggaagtaagtgga
aaacttaagttcgttgacttgattgatggtttaaccatgaatcgccaaaccgatgaattg
accggtttgagtaatattgtggtgattgatgcaaaacaaagaggtggtggagctggccgg
gatttacgaccaatggtcaaattggtttctgatgatggtgaagatatattcattgcaggg
actaatgtgccggcacaatattatcttcctgtagatgcaatcatcaattttgaagatggg
catcgagtaggcgttggcgatattattgctcgtattcctcaagagcgctcaaaaacccgc
gatattactgggggtcttcctcgtgttgctgatttgtttgaggcaagaaaaccgaaagat
tctgccgtgatggctgaaatatctggtgtggtcagttttggaaaagaaacaaaaggaaaa
cgacgcctgattattactgcttcagaaaatgaggcgcacgaagagttaattcctaaatgg
cggcatatttcagtatttgaaggtgaacatgtggaaaaaggtgagattgtagcagatgga
ccacctaatccacacgatatcttacgattactgggtgttggtgctcttgcaaattacatc
gttaatgaagttcaggatgtttatcgcctgcagggtgttaaaattaacgataagcacatc
gaaaccattgttcggcagatgttgcgtaaacgtacaataacgttcccgggagattccaaa
ttcctcgcaggtgaacagattgaagaaacggcaatgttgcaagaaaatgataagctaatc
agcgaaggtaaaatgccagcttatggcactccaatgttattggggattaccaaagcatcg
ctggcaacggaatcatttatttctgctgcttccttccaagagacaacacgtgtgcttaca
gaagctgcagtcagtggaaagatcgatgatttacgtggtttaaaagaaaatgtcatggtt
ggtcggttaatacccgcaggaactgggtatgcttatcaccagcggcgtaaggcaaaacgt
gctagaattgcaggagctgagtaa
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integrated database retrieval system
