Legionella oakridgensis: Loa_01184
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Entry
Loa_01184 CDS
T03928
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lok
Legionella oakridgensis
Pathway
lok03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Loa_01184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lok03400
]
Loa_01184
Enzymes [BR:
lok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Loa_01184
DNA repair and recombination proteins [BR:
lok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Loa_01184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHE66739
UniProt:
W0BEB2
LinkDB
All DBs
Position
complement(1080996..1082693)
Genome browser
AA seq
565 aa
AA seq
DB search
MYQLPENDYQRFVSGFPFIETTDQEQAIHQIIADMSSSRPMDRLICGDVGFGKTEVAMRA
AFIAVQNGKQVCVLVPTTLLAGQHFTTFRDRFAEFPVQIELLSRFRSGKETEQVIETLKN
GRTDIVIGTHKLFQRDIQFRDLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPR
TLNMAMAGIRDISLISTPPAKRLAIKTFWQERNDSVLREAILREILRGGQVFFLHNNVQT
IERICQDLQTLVPEANIRSAHGQMRERELERLMSDFYHHRFNVLVCTTIIETGIDIPTAN
TIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGA
GFTLATHDLEIRGAGELLGEEQSGNIHAIGFNLFMEMLDQAVHDLKEGKTPELSAPMHPG
PEIDLRLSAIIPEEYIGDIHMRLIMYKRIANAKDKLQLHQLQIEMIDRFGVLPQPVKYLL
SITELKLLAAQLGIARLHAMDQNGKIEFLESPNINAGALIHLIQLHSKRYKMEGPTRLKF
ILDSTTHEERIQEISALLTKLMKQE
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
gtgtatcaattgcccgaaaacgactatcagcgttttgtcagtggttttccatttatagaa
accaccgatcaagaacaagccattcatcaaatcattgcagacatgagctcttctcgcccc
atggaccgcctgatttgcggggatgttggcttcggcaaaaccgaagtggccatgagagct
gccttcattgccgtacaaaatggtaaacaggtctgcgttctggttcccacaacgcttctg
gccggccagcattttacaacctttcgtgatcgttttgccgaatttcctgttcaaattgaa
ttattatcccgtttccgtagtggcaaagaaacagaacaagtcattgagaccttgaaaaat
ggacgaaccgacatcgtcattggcactcataaactgtttcagcgcgacatccaattccgt
gatcttggtttattgatcatcgatgaagaacatcgttttggcgtaaaacaaaaagaacat
attaaatccttgcgtacgcatgtcgatatcctatccatgactgcaacccccattccccgc
accttaaatatggccatggccggtattcgtgacatttccctaatctccacaccgcccgcc
aaacggctggctattaaaaccttttggcaggaaagaaatgattccgtattgcgcgaagcc
attttgcgtgaaattcttcgtggcggacaagtgttttttttacataataatgtacaaacc
attgagcgtatttgccaggatttacaaacgttagtgccagaagcaaacattcgcagtgcg
catggccaaatgcgggaacgcgaacttgagcgccttatgtcggatttctatcatcatcgt
tttaacgttctggtttgcaccaccatcattgaaacaggcatcgacataccaacggccaat
accatcatcattgatagagcggataaattcggactagcacagctgcatcagttgcgtggc
cgggttgggcgttctcatcatcaagcctatgcctatttgctaacccccaatgaaaaacta
ttaacgccagatgctgttaaacgtttagaagccattgtgtccttagaagacttaggcgca
ggatttaccctggcgacccatgatcttgaaatacgtggtgcgggtgaattgctgggtgaa
gaacaaagcggcaatattcatgccatcggatttaacttatttatggaaatgctggatcaa
gctgtccatgatttaaaagaagggaagacgcctgaattgtctgcaccgatgcatccaggc
ccagaaattgacctgcgcttaagcgccattattcctgaagagtatattggggatatccac
atgcgattaatcatgtataagcgcattgccaatgccaaagacaaattacaattacaccag
ttacaaattgaaatgattgatcgattcggtgtattgcctcaaccagtcaagtatttgtta
tcgataactgaacttaaattattagctgctcaattaggaattgcccgtcttcatgccatg
gatcaaaatggcaaaatagaatttctcgaatctcccaatattaatgcaggagcattaatt
catttgattcagcttcattccaaacgctacaaaatggaaggaccaactcggctaaaattt
atcttagacagtacaacccatgaagaacgaattcaggagataagtgccttattaaccaaa
ctgatgaagcaagagtaa
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