Legionella oakridgensis: Loa_01185
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Entry
Loa_01185 CDS
T03928
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lok
Legionella oakridgensis
Pathway
lok03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Loa_01185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lok03400
]
Loa_01185
Enzymes [BR:
lok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Loa_01185
DNA repair and recombination proteins [BR:
lok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Loa_01185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
CarD_TRCF_RID
MFD_D3
UB2H
Motif
Other DBs
NCBI-ProteinID:
AHE66740
UniProt:
W0BA68
LinkDB
All DBs
Position
complement(1082636..1084444)
Genome browser
AA seq
602 aa
AA seq
DB search
MAKSILLRENLRSKQVWGQLYGSSLPLILAEYSQAQSGIKLLITPDNLSATQLQAELDFF
LEKKEHEPELLMFPDWETLPYDQFSPHEDIISERLYCLSRLQQTSNAIIISAASTLMHRL
CPPQFLNQYALVLREQQTLDTELFRQQLQQAGYHCVNKVLEHGEFALRGAMIDIYPMGSQ
TPFRIELFDDVIDSLRQFDPETQRTIAKINQIQVLPAREFPLNEQSITHFRRAFRERFTG
NPSQCPVYEAVSNHQYPSGIEYYLPLFFEETFTFFDYLPHDATICLIEAVAEQAEQFWQE
VNTRYEQRRYDINRPILNPSDCFLNPTELFTNVNHYSSLKVQHCPSEKKGAFNFNIDHAP
SLPIERQNAQPLQRLADFISDSGRRHLLVVESAGRREVLLDLLKQSNIIPKIQTSWFDFI
EDNTPINLITGPLIYGAELIDSAISIIVESQLFGEQSIPQRRSSQKTIDPDLIIRDLAEL
RVGAPVVHLQFGVGRYQGLQLIESGGNTNEFLVLAYAGNDKIYVPVTSLNLISRYTGADS
EHAPLHRLGTDQWQKEKRRPRKKFMTWPSNYLISMLKEKQNLGMCINCPKTTISVLSVVF
HL
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggctaaatcaatattacttcgtgaaaatcttcgttcgaagcaagtttggggacaactg
tatggcagcagtttacccttgatcttggcggaatatagccaggctcaatctggcataaaa
ttactcattactccagataatcttagcgcgacgcaacttcaggccgaactagactttttt
cttgagaaaaaggaacacgagccagaattattaatgtttccagattgggaaaccttgcct
tatgatcaattttctcctcatgaggatattatttccgaacgtttgtattgcctaagtcgc
ctgcagcaaacgtccaatgccatcatcattagcgcggccagtaccttgatgcatcgctta
tgtccaccacagtttttaaatcaatacgctttagtgctccgtgagcagcaaacgttggat
accgaattatttcgtcagcaactgcaacaggcaggctatcactgcgtcaataaagtgctt
gagcatggcgaatttgccctacgcggagccatgattgatatttatccgatgggcagtcaa
actccttttcgcatcgaattatttgatgatgtcatagacagtttgcgtcaatttgatccg
gaaacgcaacgaaccatcgctaaaataaatcagattcaggtgttaccggcgcgtgaattt
cctttaaacgaacaaagcattactcattttcgccgagcctttcgcgaacgatttacagga
aatcccagtcaatgtcctgtatatgaagcggttagtaatcatcaatatcccagcggtatt
gaatattatctacctcttttttttgaagaaactttcacattttttgattatttacctcat
gatgccacaatctgtttgattgaggccgtagctgaacaagctgaacaattctggcaggag
gtcaatactcgatatgagcagcgccgttatgatattaatcgcccaattcttaacccatcc
gattgctttttaaacccaactgaattattcaccaacgtcaatcattattcttcgttaaag
gttcaacactgcccaagtgaaaaaaaaggagcctttaattttaacatagaccatgctcct
tctttgccaatagagcgtcaaaacgcacagcctctgcagcgcttggctgatttcatttca
gacagtggccgccgtcatttattggtcgtagaaagtgcaggccgtcgagaagtcttacta
gacttactaaagcaaagcaatattatacccaaaatccagacgtcatggtttgattttatt
gaggacaacacacctattaatttaataacaggcccgttgatatatggcgccgagttgata
gattctgccatttccatcatcgtagaatctcaattatttggtgaacaaagcatccctcag
cgacgaagctcgcaaaaaaccatcgaccccgatcttatcattcgcgatctggccgaactt
agagtaggagcaccagtggttcatttacagtttggtgtaggacgatatcaaggcttgcaa
ctcattgaaagcggtggcaacaccaatgaatttctggtactcgcttatgccggtaatgat
aagatttatgttcctgttacctcactaaatctcatcagtcgttatacaggcgcagacagc
gaacatgccccgctgcatcgtctgggaacggatcaatggcaaaaagaaaaaagaaggccg
cggaaaaaattcatgacgtggccatcgaattacttgatctctatgctaaaagagaagcaa
aacctgggtatgtgtatcaattgcccgaaaacgactatcagcgttttgtcagtggttttc
catttatag
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