Candidatus Lokiarchaeum sp. GC14_75: Lokiarch_16670
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Entry
Lokiarch_16670 CDS
T04015
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
loki
Candidatus Lokiarchaeum sp. GC14_75
Pathway
loki03022
Basal transcription factors
loki03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
loki00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Lokiarch_16670
09124 Replication and repair
03420 Nucleotide excision repair
Lokiarch_16670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loki03021
]
Lokiarch_16670
03036 Chromosome and associated proteins [BR:
loki03036
]
Lokiarch_16670
03400 DNA repair and recombination proteins [BR:
loki03400
]
Lokiarch_16670
Enzymes [BR:
loki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Lokiarch_16670
Transcription machinery [BR:
loki03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Lokiarch_16670
Chromosome and associated proteins [BR:
loki03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Lokiarch_16670
DNA repair and recombination proteins [BR:
loki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Lokiarch_16670
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
ResIII
DEAD
PhoH
IstB_IS21
AAA_19
Zn_ribbon_3
Zn_ribbon_RPB9
nSTAND3
DZR
AAA_7
A2L_zn_ribbon
Zn_Ribbon_TF
Zn_ribbon_6
Terminase_6N
Sigma54_activat
Mg_chelatase
AAA_25
AAA_30
Motif
Other DBs
NCBI-ProteinID:
KKK44596
LinkDB
All DBs
AA seq
730 aa
AA seq
DB search
MNFCPNCESVLYLTKDHLFCKACGRSFKFELLSSLNIDKNLDTTIASSINYAQLEVKKLD
DNKYDDRVKILKSKTLTYYHFFPYEQFRESQEDLIKQISESAKARKNILLIAPNGTGKTV
IALSALLPLAIEKNLKIIYMCRTHAQNRRVIKEMTKISKFHDINNLDIKLNGLSIRGRNE
MCLNDTLLALKFNPREAMAVCGDLRKNRSCSHFLNLLKKKGELENLVSLEPELFNKPVDA
EDLILFSKKKKLCPYFLSKFLLESMKVIICNYQWIFNPFIRELFLKFIGQELNNCILVMD
EAHNLVDVATDVNSHKITPYSLRLCLKDLEMYPSNVRLSTFVEFLLNTLNQKKKDIRAEE
KAIKPGKFLEIIYKKLGYHDLNGFKNLIEELHSLSVSIHEVKLSNGQISRDFLGSLAEFW
LKWLKTYILENYFFCYTIKRVKGKKSISLEIVALDPREIAIPILKRAYTTLNLSGTANPY
VYSSLMGFNECGKSFKGIIADSPFKKKNIKAIITEGVDTKGVNRNPSMFKKIIEKINEVI
ISTPENVGIFCASYKILRGLLSNGIEMVIKKTNKKLFIEEPGLSASENIAIVDDFKSMAS
NGGGVLLGVSGGRNSEGEDYPGDYMNAVVIVGIPYHLPTPRVEAKIKYYDQIFNKQGWNF
GYLYPAIQRANQASGRPIRKISDKGAIIFMDSRFKDKSKWISGWIRKEIKVIPDEPNILI
QHLSSFWNNG
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttgcccaaattgtgaaagtgttttataccttactaaagatcatctattctgt
aaagcttgtggtagatctttcaaatttgaattattatcatccttgaatatagacaagaat
cttgatactacaatcgcatcttcgataaattatgcccaattagaagtaaaaaagcttgat
gataataaatatgatgatcgagtaaaaattctgaaatctaaaacacttacatattatcat
ttcttcccttatgaacaattcagagaatctcaagaagatttgattaaacaaattagtgaa
agtgcaaaagcaagaaaaaatattttactaattgctccaaatggtactgggaaaaccgta
atagctctgagtgccctactaccacttgcaatagaaaaaaatttaaaaataatttatatg
tgtagaacacatgctcaaaatcgtcgagtaataaaagagatgactaaaatctctaaattt
catgatataaacaatcttgacattaaacttaatgggctttctattcgaggaagaaatgaa
atgtgtttaaatgatactttgctagctttaaaattcaatccaagagaggcgatggccgtt
tgtggagatttaagaaaaaatagaagttgttctcattttttgaacttgttaaaaaagaaa
ggagaacttgaaaatcttgtttcattggaaccagaattatttaataaaccagttgatgct
gaagatcttattctattctctaaaaaaaaaaaattgtgcccttatttcctaagtaaattt
ctcttagaatcaatgaaggtaattatatgtaattatcaatggattttcaatccgttcata
cgcgaattatttcttaaatttataggtcaagaacttaataactgtattttagtaatggat
gaagctcataatttagttgacgttgctactgatgtaaattcgcataaaattaccccatat
tcattaaggttatgtttaaaagatttagaaatgtatccttcaaatgttcgtttatcaaca
tttgtggaatttttattgaacacactaaatcagaaaaagaaagatattagagcagaagaa
aaagctataaaaccagggaaatttttggaaattatttataaaaaattgggttaccatgat
ttaaatggcttcaaaaatttgattgaagaactacatagtttgagtgtctcaattcatgaa
gttaaattatctaacggtcaaatttctagagattttttaggttcattagctgaattctgg
ttaaaatggctaaaaacttatatattggaaaactacttcttctgttatacaataaaaaga
gtaaaaggaaaaaaatcaatttcacttgaaattgtagccttagatccacgtgaaatagct
atcccaatcctcaaacgagcttatacaactctcaacctctcaggaactgcgaatccttat
gtgtatagtagtttaatgggttttaatgagtgtggaaaaagctttaaaggtatcatcgca
gattcaccattcaaaaaaaaaaatataaaagctattataactgaaggagtggatactaag
ggagttaatagaaatccttctatgtttaaaaagattattgagaaaatcaatgaagtaata
ataagtacacctgaaaacgtaggtattttttgtgcttcctataaaatactcagggggctc
ctctcaaacgggatcgaaatggttataaaaaaaactaacaagaaactatttatagaggaa
ccaggtttatctgcttcggaaaacattgctattgttgatgactttaaaagtatggcttct
aatggcgggggtgtcttgttgggtgtatctggagggcgaaactctgaaggtgaagattat
cctggagattatatgaatgctgtagtgatagttggtattccatatcacttacctacacca
agagttgaggctaagattaagtattacgatcaaatatttaataagcaagggtggaacttt
ggatacttgtatcccgctatccaacgggcaaatcaagcctccggacgcccaataagaaag
atttctgataaaggagcaataatcttcatggatagtagatttaaagataaatctaaatgg
atatctggatggattagaaaagaaataaaagttattcctgatgagccaaatatcttaatt
caacatctctcttctttctggaataatggttag
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