Candidatus Lokiarchaeum sp. GC14_75: Lokiarch_17790
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Entry
Lokiarch_17790 CDS
T04015
Name
(GenBank) RecJ-like exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
loki
Candidatus Lokiarchaeum sp. GC14_75
Pathway
loki03410
Base excision repair
loki03430
Mismatch repair
loki03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
loki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Lokiarch_17790
03430 Mismatch repair
Lokiarch_17790
03440 Homologous recombination
Lokiarch_17790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
loki03400
]
Lokiarch_17790
DNA repair and recombination proteins [BR:
loki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Lokiarch_17790
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Lokiarch_17790
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Lokiarch_17790
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH_CID
DHHA1
CDC45
Motif
Other DBs
NCBI-ProteinID:
KKK44481
LinkDB
All DBs
AA seq
536 aa
AA seq
DB search
MSIYYYFDTLIYYIFNFEFIVISLNKKMESDKARLNKLYLALEEVKDRFLSYTSRNKSPV
RIYTHLDADGLSSGAILGKALYREEIPFQITVLRQLERLEIAKIIEGVTQNKNFLIFSDF
GSGQYLELQKNLISKYDFNALIILDHHIPQQVSNKEDTKKIEEIYEETKKWQVNPYFWGI
DGSLEISGAGMCYCFAKCLNKANLDLAHLAITGAIGDIQNKGRGKSFQGVNKLILKDATN
SGQIEVMDDLNYSAIKPLNEAIAYSSDLILPGLSNDINKSLIFLKTRGILMENPDGRVKT
LNELNQDEKKIVSSAIIEYASLKLDLEPIKIIQKLIVNRYLLKKELKGSDLHDIADFSNL
LNACGRTQNSSIGISIAMGDRKDLYQKSKQIITNYRKSLVKSLSWIKDNDLIKQKEWIQY
FYGEEVIPESIIGTVTSMLIFGKNNIVDKSRPLFGLAKRNNEEVYKVSGRAHEKIVSKGV
NLSRAIREACQRSNLDILGGGHPPAAGTKIPVDKIDLFLENCNIVVGNQINVPRID
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
ttgagtatttattattattttgatactttaatatattatattttcaattttgaatttatt
gtaatctcacttaataaaaaaatggaatctgataaggcaagattaaataagctatatttg
gctcttgaggaagtaaaagatcgttttttaagttatacgagcagaaacaaatctcctgtt
aggatttatacacatttagatgcagatgggctaagttcaggtgcgattctcggtaaagct
ttgtatcgagaagaaattccgtttcaaattacagtcctcagacaactagaaagactcgaa
attgctaaaatcatagaaggtgtaacccaaaataagaattttttaattttttctgatttt
ggtagtgggcagtatttagaattacaaaaaaatttaatttcgaaatatgattttaatgct
cttataatcctagatcatcatattccacaacaggtttccaacaaagaagataccaaaaaa
attgaagaaatctatgaagaaaccaaaaaatggcaagtaaatccttatttttggggaatt
gatggaagtctagaaatttctggagcaggtatgtgttattgttttgctaaatgtttaaat
aaagcaaatttagacctagctcacctagcaattacaggagcgattggtgatatacagaat
aaaggaaggggtaaatcttttcagggagttaacaagctaatattaaaagatgcgactaat
tctgggcaaattgaagtcatggacgaccttaattactctgcaataaaaccgttaaacgaa
gcaattgcttactcttcggatcttattttacctggtttatctaatgatattaataaatcc
cttatttttctaaaaacgaggggaattctaatggaaaatcctgatggaagggtgaaaaca
ttgaatgaattaaatcaagatgaaaaaaaaatagtttcctcagcaattattgagtatgct
tcactgaaattagatttagagccaattaaaataatacaaaaattgattgtaaatagatac
ttgttgaaaaaggaacttaaaggctcggatcttcacgatattgctgatttttctaaccta
ttaaatgcttgtgggcgtactcaaaattcttcaattggcatatccatcgccatgggagat
agaaaggacctttaccaaaaatctaaacaaataattactaattacagaaaatctttggtg
aaaagcctatcatggattaaagataacgatttaattaaacaaaaagaatggattcaatat
ttttacggagaagaagtaatacctgaaagtattataggaacagttacatcgatgctgatt
tttggaaaaaataatatagttgataagtccagaccattattcggtctagcaaaaagaaat
aatgaagaagtctacaaagtgtcaggaagagctcatgaaaaaattgtctccaagggagta
aatctttcgagagcaatcagagaagcttgtcaacgatctaatctagatattttagggggt
ggtcatcctccagctgcgggaacaaaaatacccgtagataaaattgacttgtttttggaa
aattgtaatatcgttgttgggaatcaaataaacgttcccagaatagattaa
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