Candidatus Lokiarchaeum sp. GC14_75: Lokiarch_40980
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Entry
Lokiarch_40980 CDS
T04015
Name
(GenBank) putative DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
loki
Candidatus Lokiarchaeum sp. GC14_75
Pathway
loki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
loki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lokiarch_40980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loki03019
]
Lokiarch_40980
03009 Ribosome biogenesis [BR:
loki03009
]
Lokiarch_40980
Enzymes [BR:
loki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lokiarch_40980
Messenger RNA biogenesis [BR:
loki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lokiarch_40980
Ribosome biogenesis [BR:
loki03009
]
Prokaryotic type
rRNA helicases
Lokiarch_40980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
SNF2-rel_dom
Cas3-like_C_2
Utp25_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
KKK41664
UniProt:
A0A0F8XHN9
LinkDB
All DBs
AA seq
377 aa
AA seq
DB search
MGINKQNVNALRNLNIQSPTPVQKKAIPLILKGQNIMAQAKTGSGKTLAFILPIIEHLEF
INNEALILVPTRELARQIEEVIRDLNHPKVKSMTIYGGVSINNQIQKLKRGVHIVVGTPG
RIIDLFKRRELLLGNMRYVVLDEGDRLWDMGFAPDVKYILSQIKTDYQFLLFSATLNSDI
RELVKKFARNDFKFLNLSRDELTVGNTKQFYYMIDNFQAKFRTFMKILKREKPEHALIFV
NTKKTAAWLSNKLRSDRRFNYRVNVISGDLSQSQREKILYAFKNRKINMLIATDVAARGL
DIDNISHVVNYDVPRYPDVYVHRIGRTSRMNKRGVAITLCLKDEYEYLCQIEGLIDKEIR
QKTFETQSQSNFHNPFY
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
ttgggcattaacaaacaaaatgttaatgctttacggaatttgaatatacaatcacccact
cctgttcaaaaaaaggctattcctttaattttgaagggtcaaaatattatggctcaagca
aaaacagggagtgggaagacgctcgcttttatattacccatcatagaacatttagaattt
attaacaacgaagctctaatattggtaccaactagagaacttgctaggcaaattgaagag
gttataagagatttaaaccacccaaaagtcaaatctatgactatttatggtggtgtctcg
attaataatcaaatacaaaagcttaagagaggggttcatattgttgtcggaacccccgga
agaattattgatctctttaaaagaagagaattactccttggaaatatgcgttatgtcgta
ttagacgaaggtgatagactttgggatatgggttttgctccagatgttaaatacatcctt
agccaaataaaaacagattaccagtttttactgttttcagcaaccttgaattcagatatt
agagaattagtgaaaaaatttgccagaaatgattttaaatttcttaatttaagtagagat
gagctcactgtaggcaatacaaaacaattttattatatgatcgacaattttcaagctaaa
tttagaacgtttatgaagattttaaagagggaaaaacctgagcatgcactcatttttgta
aatacgaaaaaaaccgcggcttggttgtcaaacaaattaagatcagaccgaagatttaat
taccgagtaaatgtgatctcaggtgatttatctcaatctcagcgtgaaaagattctttat
gcgtttaaaaaccgtaaaattaacatgctcatcgcaactgatgtagccgcaaggggatta
gacattgataacatatctcacgtggtaaattatgatgttccaagatatccagatgtctat
gttcatcgaattggaaggacttctcggatgaataagcgaggtgttgcgatcacgctatgt
ttgaaggatgagtatgaatacctttgccaaattgagggcctcatagataaggagatccgc
caaaagacattcgaaactcaaagtcaatcgaatttccataatcccttttattaa
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