Paucilactobacillus oligofermentans: LACOL_0957
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Entry
LACOL_0957 CDS
T06755
Symbol
recQ
Name
(GenBank) Putative ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lol
Paucilactobacillus oligofermentans
Pathway
lol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACOL_0957 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lol03019
]
LACOL_0957 (recQ)
03400 DNA repair and recombination proteins [BR:
lol03400
]
LACOL_0957 (recQ)
Enzymes [BR:
lol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LACOL_0957 (recQ)
Messenger RNA biogenesis [BR:
lol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LACOL_0957 (recQ)
DNA repair and recombination proteins [BR:
lol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LACOL_0957 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Helicase_C_2
AAA_22
AAA_30
SNF2-rel_dom
Vir_act_alpha_C
Motif
Other DBs
NCBI-ProteinID:
CUS26265
UniProt:
A0A0R1RHW1
LinkDB
All DBs
Position
I:complement(975007..976452)
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AA seq
481 aa
AA seq
DB search
MNEQQLHTILQQEFGFDSFRPGQQEVIESVLNGNDTLAILPTGAGKTLLYQFPAKVMDGV
VIIISPLLSLMQDQVNRLRQLGEKKVTMLSSIQTFGQQQATLNHLNQFKYVFASPETITK
PEVIQHLQRIEIAMIVIDEAHCVSQWGPEFRPQYLLVKTLLKTVPHKVTLMLTATATQRV
QGDILIKLGLSVKQVTTVRQSVNRPNIFLSVNKVNSDKDKRTELLGLVNGVSGAGIIYFS
SRKQATQVAQWLQEQTNLNVAAYHAGMNQTTRYKIQHQFMNDELQIICATSAFGMGIDKD
NVRFVVHYHVPANLENYVQEIGRAGRDGEQSLAVLLYAPGDEYLQVNLSDLTIPSDAVVN
DFMENRIDKNQLGDISNLLKFYQDQHLQPEQVINIFHQQRQKNRQQLDKLLEYINTLECR
RSIILNYFSENLLKHDLVCCDGLGNDLNINQLELKQSNKKLVENELKSWQSRLGKLFFVK
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagcaacaattacatacaattctccaacaagaatttggatttgatagctttcga
cctggtcagcaagaagtaattgaatcagttctcaatgggaatgatacattagctattttg
ccaactggagcgggaaaaaccttattatatcaattcccagcgaaggtaatggatggggtt
gtgattataatttcaccattattgtcattaatgcaagatcaagtaaatcgattacgacag
ttaggtgaaaaaaaggttacgatgttaagttcgattcaaacctttggccaacaacaagca
accttaaaccatttaaatcaatttaaatatgtctttgcttcaccggaaacgattaccaaa
ccagaagttattcaacacttacaacggattgaaattgcgatgatcgtaattgatgaggcc
cactgtgtttcacaatggggaccagaatttaggccacaatatctattagttaaaacacta
cttaagactgtgccacataaagtgacattgatgctcactgcgacagctacccagcgggtt
caaggcgacatcctaattaaattaggtctaagtgtgaaacaagttacaacagttcgtcaa
tcagttaatcgacctaatatttttctaagtgttaataaagttaattctgataaggataag
cgaactgaattgttaggtttagtgaatggagttagtggtgctggaattatttatttttca
agtcggaaacaagcaacccaagtggcccaatggcttcaagaacaaacaaatttgaatgtt
gccgcttatcatgcggggatgaatcaaacaacacgttataaaattcaacatcaatttatg
aatgatgaactgcaaatcatttgtgcaactagtgcttttggaatgggaattgataaggat
aatgttcgttttgtagtacattatcatgtaccagctaatttagagaactatgtccaagaa
atagggcgtgctggaagagatggtgagcaaagcttagcagtcctattatatgcgcccggg
gatgaatatctgcaagttaatttaagtgatttaaccattcctagcgatgccgtcgtgaat
gattttatggaaaatcgaattgataaaaatcaattaggtgatattagtaatttacttaaa
ttttatcaagatcaacatttacaacctgaacaagtgattaatatttttcatcaacagcga
caaaaaaatcgacaacaattagataaactattagaatatattaatacattagaatgccga
cgctcaattattttaaattatttcagtgaaaatttattgaaacatgatttagtctgttgt
gacgggcttggtaatgatttaaatattaatcaactggaattaaaacaaagtaacaaaaaa
ctggttgaaaatgaattaaaaagctggcagagtagactaggtaaactattttttgtaaaa
tcttaa
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