Paucilactobacillus oligofermentans: LACOL_0975
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Entry
LACOL_0975 CDS
T06755
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lol
Paucilactobacillus oligofermentans
Pathway
lol02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lol00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LACOL_0975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lol03021
]
LACOL_0975
Transcription machinery [BR:
lol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LACOL_0975
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Myo5a
DpdG
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
CUS26283
UniProt:
A0A0R1RKI3
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All DBs
Position
I:complement(994340..995479)
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AA seq
379 aa
AA seq
DB search
MAKKKEEKIISNLEDFDQKKYDAAVGKLIRDYKKDKEIKFDELTDKIASPFGLVEDGMEN
LISNIEDAGISVVDENGDPDPRALRTEKEISSKELKDTSAPTGIKINDPVRMYLKEIGRV
NLLKAEEEVKLAERIEAGEEEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLM
KAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQD
LGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAE
HAAYELLKEQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK
ALRKLRHPSRSKQLKDFLE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaaaagaagaaaaaattatttcaaacttggaagatttcgatcaaaagaaa
tatgatgctgctgttggtaaattgattcgtgactataaaaaagataaagaaattaaattt
gatgaattaaccgataagattgcgtcaccatttggtttagttgaagatggaatggaaaat
ctaatttcaaatatcgaagatgctggaattagtgttgtcgatgagaatggtgatccagat
cctcgtgctttaagaactgaaaaagaaatttcaagtaaagaattaaaagatacttctgca
ccaactggaatcaaaattaatgatcccgttcggatgtatttgaaggaaattgggcgcgtt
aatttgttgaaagctgaagaagaagttaaattagctgaacgaattgaagcgggtgaagaa
gaagctaaacaagaattagctgaagctaacttgcgtttagttgtttcaattgctaaacgt
tatgttggtcgtggaatgcaattccttgatttaatccaagaaggtaatatgggattaatg
aaggccgttgaaaaatttgattatcgtaaaggtttcaagttttcaacttatgcaacttgg
tggattcgtcaagcgattacacgtgccattgccgatcaagctcggacaattcggattcca
gttcatatggttgaaacgattaataagttaatccggattcaacgtcaattacttcaagat
ttgggtcgcgaacctacacctgaagaaattggtgctgaaatggatatgccaactgaaaaa
gttcgtgagattctaaaaattgcacaagaaccagtatctttggaaacaccaattggtgaa
gaagatgattctcatctaggtgattttattgaagatcaagatgcaactagtccagctgag
catgcggcttatgaattattaaaagaacaacttgaaaacgttcttgatactttaactgat
cgtgaagaaaatgtcttacgtttacgatttggtctcgatgatggtcggactcgtacctta
gaagaagttggaaaagtatttggtgtaactcgagaacgaattcgccaaatcgaagccaaa
gcacttcgtaagttacgtcatccatcacgttcaaaacaattaaaagatttcttggaatag
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