Paucilactobacillus oligofermentans: LACOL_1522
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Entry
LACOL_1522 CDS
T06755
Symbol
srmB
Name
(GenBank) DEAD box ATP-dependent RNA helicase SrmB
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lol
Paucilactobacillus oligofermentans
Pathway
lol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACOL_1522 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lol03019
]
LACOL_1522 (srmB)
03009 Ribosome biogenesis [BR:
lol03009
]
LACOL_1522 (srmB)
Enzymes [BR:
lol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LACOL_1522 (srmB)
Messenger RNA biogenesis [BR:
lol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LACOL_1522 (srmB)
Ribosome biogenesis [BR:
lol03009
]
Prokaryotic type
rRNA helicases
LACOL_1522 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
CUS26852
LinkDB
All DBs
Position
I:complement(1562279..1563898)
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AA seq
539 aa
AA seq
DB search
MKFSELGLSEDLLKAIKRNGYEEATPIQEETIPLVLKGEDVIGQAQTGTGKTAAFGLPIV
EDVDINNGDIQALVISPTRELAIQTQEELYKLGKDKKVKAQVVYGGADIRRQINNLKSHP
QVLVGTPGRLLDHINRRTVKLDNLKTIVLDEADEMLNMGFLDDIESIIKKTPESRQTLLF
SATMPPAIKKIGVQFMSEPHHVKIKAKEVTTDLVDQFYVRSKDFEKFDTMTRLIDVQDPD
LTIVFGRTKRRVDELSKGLEARGYNASGIHGDLTQQRRSQIMQQFKNGKIDILVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHHGVSLTFVTPSEMDYLREIEKLTKV
RMLPLKPPTADEALKGQLVNAVSKADEIIGQTETVKFEEEAEKLIAKYEPIDLAAALLNN
ITKDDSSSVPVKITPERPLPRHKGGGGGGRRSGGSRNGGGGYRGGSRSGGGHSGGGYRGG
SRSGGGSRDGSRSSGGGNREGGYKGSRDNHGSSNRSSSSNRGGNSGASHSFSIRKKNND
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttagcgaattgggtctatcagaagacctattaaaagccattaaacgtaatggt
tatgaagaagcaaccccaatccaagaggaaactattccattggtattaaagggtgaagat
gtaattggacaagcccaaaccggtactggtaaaacagctgcctttggtctaccaattgtt
gaagatgtcgatatcaataatggagacattcaagcattggttatctcaccaactcgtgag
ttggctatccaaacgcaagaagaattatacaaattaggtaaagataaaaaggttaaagcc
caagttgtttatggtggagcagatattcgccgtcaaattaacaacttgaagagtcatcca
caagttcttgtgggaactccaggtcgtttacttgatcatatcaaccgccgaacagttaaa
ttggataatcttaaaacaatcgttttagatgaagccgatgaaatgctaaacatgggattc
ttagatgatatcgaatcaatcatcaagaagaccccagaaagtcgccaaacattgttgttc
tcagctacaatgccaccagctattaagaaaattggtgtgcaatttatgtctgaaccacat
catgttaagatcaaggctaaggaagttaccactgacttagttgatcaattctatgttcgt
tcaaaggactttgaaaaatttgatactatgactcgtttaatcgatgttcaagatccagat
ttgacaatcgtctttggtcgtacaaagcgtcgtgttgatgaattatctaagggacttgaa
gcgcgtggatacaatgcttcaggaattcatggagatttaactcaacaacgtcgtagccaa
attatgcaacaatttaagaatggtaaaattgacattcttgttgcaactgatgtggctgct
cgtggattagatatctcgggtgtaacccatgtttataactatgatattcctcaagatcca
gatagttatgttcatcgtattggacgtactggtcgtgccggacatcatggtgtttcatta
acgtttgtgactcctagtgaaatggattatcttcgcgaaattgaaaaattaacgaaggtt
cgcatgttaccattgaagccaccaacggctgatgaagctttgaagggtcaattagttaat
gctgtttctaaggctgatgaaattattggtcaaactgaaacggttaaatttgaagaggaa
gctgaaaagctaatcgccaaatacgaaccaattgacttggcagcagccttgcttaacaat
atcactaaagatgattcatctagtgtgccagttaagattactccagaacgtccattacct
cgccataaaggtggcggtggcggcggtcgtcgtagcggtggaagccgtaacggtggcggc
ggttatcgtggtggaagtcgctctggcggtggacattcaggtggcggttatcgtggtgga
agtcgttctggcggtggaagtcgtgatggtagtcgttcatcaggcggtggaaaccgtgaa
ggtggatacaaaggcagtcgtgataaccatggtagtagcaatcgcagctcaagtagcaac
cgcggtggcaatagtggcgcatcacactcattcagtattcgtaaaaaaaataacgattaa
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