Limosilactobacillus oris: AYI71_04220
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Entry
AYI71_04220 CDS
T04391
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lor
Limosilactobacillus oris
Brite
KEGG Orthology (KO) [BR:
lor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lor03032
]
AYI71_04220
03400 DNA repair and recombination proteins [BR:
lor03400
]
AYI71_04220
Enzymes [BR:
lor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AYI71_04220
DNA replication proteins [BR:
lor03032
]
Prokaryotic type
DNA Topoisomerases
AYI71_04220
DNA repair and recombination proteins [BR:
lor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AYI71_04220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
DUF2996
Motif
Other DBs
NCBI-ProteinID:
AMS08063
LinkDB
All DBs
Position
853807..855945
Genome browser
AA seq
712 aa
AA seq
DB search
MATKTAKKTTKATATKKKTTRRRSKVKKNLVIVESPSKAKTIGRFLGRSYKVVASLGHVR
DLPKSRMGVDIEHDYQPDYISIRGKGDVIKELRKDAKNAKAVYLASDPDREGEAIAWHVS
NILKLDDDQKNRVTFNEITKDAVKNAFKEPRTINMDLVDAQQARRVLDRLVGYSISPILW
KKVKKGLSAGRVQSVALNLIIQRENEIRNFKPEEYWTIDAEFKHGRDKFTAAFYGENDKK
VKLSNNEDVQRILGKLDKKQDFAITKVTRKERRRQPQPPYTTSTMQQDANRRLNFRTRKT
MMAAQMLYEGIDIKQGAPVGLITYMRTDSTRIASIAKHEASQFIHEQYGGEYAAVKPVKG
KLPEGAQDAHEAIRPTSVHRTPAKMKPYLTNDQYKLYSLIWARFVASQMTPEVIDTMNVN
LEQNGVDFRANGSKVKFLGFTKVYKRGDDKDNVLPELNEGDQAQMVSDEPAQHFTQPPAR
YTEAALIKTLESNGVGRPSTYAPTLDTIQRRYYVRLVSRHFEPTELGEIVNKIIEKQFPD
IVNAQFTADVEGELDQVEEGKQNWIKVVDSFYQPFSKEVHNAEEQVAKIQMKDELAGIDC
DICGAPMIIKMGRYGKFYACSRFPNCRNTKAIVKDTGVTCPVCKKGTVVERKSKKNRVFY
GCSRYPDCDFVSWDRPIGRDCPKDGHFLVEKKVKGGKQVICPNGDYEEAVQK
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaaaccgctaaaaaaacaacgaaggctaccgcgacgaaaaagaagacgacg
cggcgccgctcaaaagtaaagaaaaatcttgtaattgtcgaatcaccgtcgaaggctaaa
acgattggccgctttttggggcgctcctataaggtcgttgctagtctaggccacgttcgc
gacttgccgaagagccggatgggagttgatattgaacacgactaccagcctgactatatt
tccatccgggggaagggtgacgtcattaaggagttgcgtaaggatgcgaagaacgctaag
gcggtctacctggcatctgaccccgaccgggagggggaagcaattgcctggcacgtttcc
aatattttgaaactagatgatgaccagaagaaccgggtaacctttaacgaaattaccaag
gatgcggttaagaacgcttttaaggaaccgcggactattaacatggacctggtcgatgcc
cagcaggcacggcgggtgctggaccggttagtaggttattctatcagtccaatcctgtgg
aagaaggttaagaagggactgagtgccggccgggtgcagtccgttgcccttaacctgatt
atccaacgggaaaatgaaatccgtaatttcaaacccgaagagtactggacgattgacgcc
gaatttaagcacggccgggataagtttaccgctgccttctacggtgaaaatgataagaag
gtcaagctcagtaataacgaggatgttcaacggatcttgggtaagctcgataagaagcag
gactttgctattaccaaggttacgcggaaggaacggcggcgccaaccacaaccgccgtac
acaacgtcaacgatgcagcaggacgctaaccggcggctgaacttccggacccggaagacg
atgatggctgcgcagatgctttatgaaggaattgacattaagcagggagcccctgtcggc
ctcatcacctatatgcggacggactccacccgaattgcctcgattgctaagcacgaggcc
tcgcaatttattcatgagcagtatggtggtgaatacgcggcggtcaagccggttaagggg
aagttgccagaaggggctcaggacgcccacgaagcaattcggccaacctcggttcaccga
acaccagccaaaatgaaaccctacctgaccaacgaccagtacaagctatacagcctgatt
tgggcgcgctttgtcgccagccagatgacccctgaagtaattgatacgatgaacgtcaac
ctggaacagaacggggttgacttccgtgccaatggttccaaggtcaagttcctaggcttt
accaaggtctacaagcggggcgatgataaggataacgtccttcccgaattgaatgagggg
gaccaagcgcaaatggtcagtgatgagccggcccagcactttacccagccaccggctcgt
tacacagaagcggccctcatcaagaccttggaaagcaatggggtcggccggccatcgacc
tacgcaccgaccctggacacaatccagcggcggtactatgttcggctcgtatcccggcac
tttgaaccgacggaactgggggaaattgtcaataagattattgaaaaacagttccccgac
atcgttaacgcccagtttacggcggacgtcgagggtgaactagaccaagttgaagaaggg
aaacaaaactggattaaggtggtcgacagcttctaccagccattctctaaggaagtccat
aatgccgaagagcaggttgccaagatccagatgaaggatgaactggccggcatcgactgt
gatatttgtggagcgccgatgatcatcaagatgggccggtatggtaagttttacgcctgc
tcgcgcttccctaactgccggaataccaaggccatcgtcaaggatactggggtgacctgc
ccggtctgcaagaagggaacggtcgtggaacggaagtccaagaagaaccgggtcttctac
ggatgctcccgctatcctgactgtgactttgtttcctgggaccgcccaattggccgtgac
tgccctaaggatggtcacttcttagttgaaaagaaggtcaaggggggcaaacaggttatt
tgtccaaacggtgattacgaagaagccgttcagaaataa
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