Limosilactobacillus oris: AYI71_08250
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Entry
AYI71_08250 CDS
T04391
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lor
Limosilactobacillus oris
Pathway
lor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYI71_08250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lor03019
]
AYI71_08250
03009 Ribosome biogenesis [BR:
lor03009
]
AYI71_08250
Enzymes [BR:
lor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AYI71_08250
Messenger RNA biogenesis [BR:
lor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYI71_08250
Ribosome biogenesis [BR:
lor03009
]
Prokaryotic type
rRNA helicases
AYI71_08250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
DUF1087
HTH_22
Motif
Other DBs
NCBI-ProteinID:
AMS08766
LinkDB
All DBs
Position
complement(1649096..1650574)
Genome browser
AA seq
492 aa
AA seq
DB search
MYFSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTI
EHVDVENPAIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNP
QILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKRTPSERQTLLF
SATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPD
LTIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAA
RGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRV
RMLPLKPPTEEEAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKYDAVELVAALLND
LTKDDASQVPVKITPERPLPSRKRNGRGGNYRRGGHGNSHRNFHRNGGDGHRRFNGDRKR
RFSNNRNRRRED
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
ttgtattttagtgaattaggtttatccaacaagttgctcaaggcgatccaacgctccggt
tacgaagaggccacgccgatccaagaacaaacgatcccgatggtcttagccggcaaggac
gtgatcggccaggcccaaaccgggactgggaagacggcagcgtttggcctgccaaccatt
gagcacgttgacgtggaaaacccggcgattcaagccctgatcatctccccgacccgggag
ttggccatccaaaccgaagaggaactcttccgtctcggtaaggaaaagcgcgtgaaggtc
caagtggtttacgggggcgccgatatccgccgccaaatccgttccttagaaaagaatccc
caaatcctggtcgggacgccggggcgattgcgtgaccacttgcgccgcggaacggtcgac
ttgtccggggtacaaaccctcgtcttagacgaagccgatgaaatgttgaacatgggcttt
ttagaagacatcgaagacatcatcaagcgaacgccaagcgaacgccaaaccctgctcttt
tcggccaccatgccgccggaaattaagcggattggggttcaatttatgcacgacccgcaa
actgttaagatcaaggctaaggaactgaccaccgacctggtggatcagtactacgttcgg
gccaaggattacgagaagtttgacatcatgacccggatgatcgacgtccaagacccggac
ctgacgatcgtctttggccggaccaagcgtcgggtcgatgaactatcccgcgggctgatt
gcccggggctacaacgccgccgggattcacggtgatttgactcaggaccggcgcagcaag
atcatgcgccgctttaaggaaggccacttggacatcttagtggcaaccgacgtggcggcc
cggggcttagacatttccggggtgacccacgtttacaactacgacatcccgtctgacccg
gattcttacgttcaccggattggccggacgggccgggccgggcaccacggggtctcttta
accttcgtgacgccaaacgaaatggattacctgcacgaaatcgagaagttaacccgggtc
cggatgttaccgctgaagccaccgacggaagaagaagccttccgtggtcaagtggccagt
gcctacaacgacattgattccttggtggctgatccgacgaccaaccgttacagcgaagac
gccgctaagttgttggaaaagtacgacgccgttgaattggtggcggcccttttaaacgac
ctgactaaagacgacgccagtcaagtaccggtcaagatcacaccggaacgaccactacca
agtcgcaagcgcaacggtcgcgggggaaactaccgtcgcggcgggcacgggaattcacac
cgtaacttccaccggaacgggggcgatggtcaccggcgcttcaatggtgaccgtaagcgg
cgcttttcaaacaaccggaaccggcgccgcgaggattaa
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