Limosilactobacillus oris: AYI71_10980
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Entry
AYI71_10980 CDS
T04391
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lor
Limosilactobacillus oris
Pathway
lor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYI71_10980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lor03019
]
AYI71_10980
Messenger RNA biogenesis [BR:
lor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYI71_10980
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
EF_assoc_2
Motif
Other DBs
NCBI-ProteinID:
AMS09232
LinkDB
All DBs
Position
2232931..2234748
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AA seq
605 aa
AA seq
DB search
MRKLQIKNNEVAFFAVGGLGEIGKNMYCVQFQDEIVIIDCGVLFPEDELLGVDYVIQNYD
YLVENKEKIKGIFITHGHEDHIGGLPFFLQKVNVPIYAGPFATSLIKGKLDEKHLLRSTE
LHEIDEFSEVHFKKLWVSFFRTTHSIPDTVGVAVHTPQGTIIQTGDFKFDLTPVGNLPAP
NFQQMAKLGEEGVLLLTSDSTNAERPEFTKSERWVDIHIRRVFERIKGRIIFASFASNVY
RLREASDAAMRQGRKIAIFGRSMENAIAAGQALGYLKIPEDSLIDPNELNSYPPEKVMIM
CTGSQGEPMAALSRIANGTHRQITIQPEDTVVFSSNPIPGNTTSVNALINKLEESGATVI
HGYVNNIHTSGHGGQIDEELMLRLMKPKFFAPVHGEYRMQKIHTKLAQLTGVPKENTFIL
ENGDVLALTKDTCRLADHIESMGDVYIDGRDVSDSVGDPEIRERRMLSEEGVVTAVAVVD
LKDYQIVAGPDIVSRGFVYMHESQELIKAANHEVFWAILNTFKNHKRVDSRAINRMIVSR
LQRLLYDRTGRRPVIIPMVTILNADAQERAPKKNQAEDGKKGSGATRRNNRKRRPSAKKT
AAVTE
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaagttacaaattaagaataatgaagtggccttctttgctgtcgggggcctgggg
gaaattgggaagaacatgtactgtgttcagttccaagatgaaattgtgatcattgactgt
ggggtcctcttcccggaagacgaactactcggggtcgattacgtcattcaaaattacgat
tacctagttgaaaataaggaaaagattaaagggattttcattacccacggtcacgaagac
cacattgggggactccccttcttcttgcaaaaggttaacgtgccgatctatgccggtccg
tttgccacctcgttgattaaggggaagttagacgaaaagcacctcttgcggagcacggaa
ctgcacgagattgatgaattctccgaggttcactttaagaagctgtgggtctcctttttc
cggactactcactcgattccggatacagtgggggtagcggttcacaccccgcaagggacg
atcattcaaaccggggacttcaagtttgatttaaccccagttggcaacttgccggcgccc
aacttccaacaaatggccaagttgggtgaagaaggggtgctcttgttgacctcggactcc
accaacgccgaacggccggagttcactaagtccgaacgttgggttgacatccacattcgg
cgggtcttcgaacgaattaaggggcggatcatctttgcctcctttgcctccaacgtttac
cggttgcgggaagcctctgacgccgccatgcgccagggccgcaagatcgccatttttggt
cggtcaatggaaaacgccattgcggcgggtcaggcactgggttacctaaagatcccggaa
gactccttgatcgaccctaacgagttaaactcctacccgccggaaaaggtcatgatcatg
tgtacgggttcgcagggggaaccaatggccgccctgtcacggatcgctaacgggacccac
cgtcagatcacgatccaacctgaagatacggtggtcttctcctccaacccaattccgggg
aacacgacctcggtcaacgccctgattaacaagttggaagaaagcggcgctaccgttatc
catggttacgttaacaacatccacacgtccggccacgggggccaaattgacgaagaacta
atgctgcgcttgatgaagccgaagttttttgccccggtccacggtgaataccggatgcaa
aagatccacactaagctggcccaattgaccggggtgccgaaggaaaacaccttcatccta
gaaaacggggacgttctggccttgaccaaggacacctgtcgcttagccgaccacatcgaa
tcgatgggggacgtttacattgacggacgcgacgtcagcgattcagttggtgatccggaa
attcgcgaacggcggatgttatccgaagaaggggttgtaacggcggtagccgtggtcgac
ttgaaggactaccaaatcgtggcggggccagatattgtttcccggggctttgtgtacatg
cacgaatcccaggaactgatcaaggcggccaaccacgaagtcttctgggcgatcctaaac
accttcaagaaccacaagcgggttgatagccgggccattaaccggatgatcgtctcacgt
ttgcaacggctcttgtacgaccggaccggccggcgcccagtcattattccgatggtgacg
atcctaaacgccgatgctcaggaacgggcaccaaagaaaaaccaagccgaagatggtaag
aaaggatccggggcaacccggcgtaacaaccgtaagcgtcgtccgagcgccaagaaaacg
gctgcggtcaccgaatag
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