Limosilactobacillus oris: AYI71_11155
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Entry
AYI71_11155 CDS
T04391
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lor
Limosilactobacillus oris
Pathway
lor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AYI71_11155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lor03021
]
AYI71_11155
03400 DNA repair and recombination proteins [BR:
lor03400
]
AYI71_11155
Enzymes [BR:
lor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AYI71_11155
Transcription machinery [BR:
lor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AYI71_11155
DNA repair and recombination proteins [BR:
lor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AYI71_11155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AMS09260
LinkDB
All DBs
Position
2260986..2264567
Genome browser
AA seq
1193 aa
AA seq
DB search
MNSLAGHLVKYGKHRTRRSYSRIKEVLDLPNLIEIQTDSYNWFMDKGLREMFDDIMPIDD
FQGKLSLEFVDYQLLEPKYTVAEAREHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFP
LMTDQGTFIINGAERVIVSQLVRSPGVYYNEEADKNGRPSYGANFIPNRGAWLEYETDAK
GISYVRIDRTRKLPITELVRALGFGSDDEIWDMLGSESESLNATIEKDLHKEPEDSRVEE
SLKDIYERLRPGEPKTADSARSLLMTRFFDPKRYDMAPVGRYKTNKKLQMKYRLLGLTLA
ETLADPETGEIIAKDGDVITKEVLKELEPVLEQDDFKMITYTPSDEAVVTAPVQLQKIMV
YSKNDPERKVPVVSNGHISLDLKHIQPADILASINYFLNLQEGIGTTDDIDHLGNRRIRS
VGELLQNQFRIGLARMERVVRERMSIQDINTVTPQQLINIRPVVASIKEFFGSSQLSQFM
DQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSL
SSYARVNAYGFIETPYRRVSWADHKVTDRIDYLTADEEDNFIIAQANTPLNEDGSFVYDE
IMCRDKEDYIETAPENVDYMDVSPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLI
NPHAPLIGTGIEYKAAHDSGVALIAKNSGTVEYVDAREVRVRQEDGTLDTYKLMKFRRSN
GGKNYNQRPIVKVGEWVDADDVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAIAINE
RLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVSEDARKNLDESGVIRVGAEVHDG
DILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTRENGD
ELAPGVNKMVRVYIAQKRKIQVGDKMSGRHGNKGTVSIVVPEEDMPYMPDGTPIDIMLSP
MGVPSRMNIGQVIELHLGMAARELGIHIATPVFDGANDQDVWDAVKEAGLPSDGKTILYD
GRTGEPFEQRVAVGVMHYLKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTYKSDDTVGRVNTYQAIIDGDQIPKPGVPESFRVLVKELQSLG
LDMKVLDDKHEEIQLKSMDEDVADVRKLARRGHETLEEQPAQATSAQDEAKQD
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
gtgaatagtttggctggacacttagttaagtacggtaagcaccgtacccgtcgttcttac
tcccgaatcaaggaagtcttggacctgcctaacttgatcgagattcaaaccgattcttac
aattggtttatggacaagggtttgcgggaaatgtttgacgacattatgccgatcgatgat
ttccaggggaagctatccttggaattcgttgactaccaattgttggaaccaaagtacacg
gtcgctgaagcgcgtgaacatgacgcaaactactcagcaccactgcacgtaacgttacgc
ctgaccaaccacgaaacgggcgaaatcaagtcccaagacgtcttctttggtgacttccca
ctgatgacggaccaagggaccttcatcatcaacggggccgaacgggttatcgtatcccaa
ttagttcgttccccaggggtttactacaacgaagaagccgacaagaatgggcgcccaagc
tacggtgccaacttcatcccgaaccggggggcttggctagaatacgaaaccgacgctaag
ggaatttcctacgtccgtatcgaccggacccgtaagctaccaattacggaattagttcgg
gcccttggttttggttccgatgacgaaatttgggacatgttggggagcgaatcagaatcc
ctgaacgccaccattgaaaaggacttacacaaggaaccggaagactcccgggttgaagaa
tccttaaaggatatctacgaacggctccgtccaggtgaaccgaagacggccgactccgca
cggtcccttttgatgacccgcttctttgatccaaagcgctacgacatggcgccagttggt
cgttacaagactaacaagaagctgcaaatgaagtaccgtttgttaggtctgaccctggct
gaaaccctggccgacccagaaaccggtgaaattatcgccaaggacggggacgtcatcacc
aaggaagtcttaaaggaactcgaaccggttctggaacaagacgactttaagatgatcacc
tacacgccatccgatgaagcagtggtaaccgcgccggttcaactgcaaaagatcatggtt
tactccaagaacgaccctgaacgcaaggtgccggtggtatctaacggtcacatctccttg
gacttaaagcacatccaaccagccgacatcctggcttcgatcaactacttcttgaactta
caagaagggatcgggactaccgatgacatcgaccacttgggtaaccggcggattcgttcc
gttggggaactgttgcaaaaccaattccggatcgggctcgcccggatggaacgggtggtt
cgcgaacggatgtcaatccaagacatcaacaccgtaacgccacaacaactgatcaacatt
cgcccagtcgtggcttcaattaaggaattctttggttcctcccaactttcccagttcatg
gaccagaccaacccactgggtgaattgacccacaagcggcgtctgtccgccctgggaccg
ggtggtttgacgcgtgaccgggccggttatgaagtccgggacgttcactatacccactac
ggtcggatgtgcccaatcgaaacgccggaaggaccgaacatcgggttgatcaactcgctg
tcctcttacgcccgggtgaacgcatacggctttatcgaaacgccgtaccgtcgtgtctca
tgggccgaccacaaggtaaccgaccggatcgactacctgacggccgacgaagaagataac
ttcatcatcgcccaggccaacacgccactgaacgaagatggttcctttgtttacgacgaa
atcatgtgccgtgataaggaagactacatcgaaacggcgccagaaaacgtcgactacatg
gacgtttcgccaaagcaagtggtttccgttgcctccgcatgtattccgttcttggaaaac
gacgactccaaccgggccttgatgggtgccaacatgcaacggcaagccgttccgttgatt
aacccacacgctccgttgatcgggaccgggattgaatacaaggccgcccacgactccggg
gtcgctttgatcgctaagaacagtgggaccgttgaatacgttgacgcccgcgaagtacgg
gtacgccaagaagacggaacgttagacacttacaagctgatgaagttccgccgctctaac
ggtggtaagaactacaaccaacggccaattgttaaggttggcgaatgggttgacgctgat
gacgtcttagccgacgggccatcaatggaacaaggggaattagcccttggtcaaaaccca
ctgatcgccttcatgacttggcagggttacaacttcgaagatgccatcgccattaacgaa
cgcctggttaaagacgacgtttacacttcgattcacatcgaatcttacgaatccgaagcc
cgcgaaactaagctcggaccagaagaaatgacgcgcgaaattccaaacgtcagtgaagac
gcccgcaagaaccttgatgaatccggggtgatccgggtaggggccgaagtccacgatggt
gacattttggttggtaaggtaacgccaaagggggttaccgaactatccgccgaagaacgg
ctcttacacgccatctttggtgaaaagtcacgcgaagtccgtgatacctccctcagagtg
ccacacggtggtggcgggatcatccaagacgtgaaggtctttacccgcgaaaacggtgac
gaattagccccaggggttaacaagatggtccgtgtttacatcgcccagaagcggaagatc
caagtcggggacaagatgtccggtcgtcacgggaacaaggggacggtttcgatcgtcgtt
ccagaagaagacatgccgtacatgccagatgggaccccaattgacattatgctgtcacca
atgggtgtgccgtcccgtatgaacatcggtcaggtgatcgaacttcacttggggatggct
gctcgcgagctggggatccacattgccacgccagtctttgatggtgccaacgaccaagac
gtttgggatgccgttaaggaagccggcttgccgtccgatgggaagacgatcctttacgat
ggtcggaccggggaaccatttgaacaacgggttgccgttggggtcatgcactacctgaag
ctggcccacatggttgacgacaagatccacgcccgttcgactggtccatactcactggtt
acccaacaaccacttggtgggaaggcccaattcgggggacagcggttcggtgaaatggaa
gtttgggccctagaagcatacggggctgcttacaccctgcaagaaatcttgacttacaag
tctgacgatacggtcggccgggtaaatacttaccaagccatcattgacggggaccaaatt
ccaaagccaggggtaccggaatccttccgtgtgctggttaaggaattgcaatcccttggg
ttagacatgaaggtcttagatgacaagcatgaagaaatccagcttaagagcatggatgaa
gacgttgctgacgttcggaaactggcccgccgtggccacgaaacgctggaagaacaacca
gcgcaagcgacgagcgcccaagacgaagccaagcaagattag
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integrated database retrieval system
