Limosilactobacillus oris: AYI71_14555
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Entry
AYI71_14555 CDS
T04391
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lor
Limosilactobacillus oris
Pathway
lor03030
DNA replication
lor03430
Mismatch repair
lor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AYI71_14555 (dnaE)
03430 Mismatch repair
AYI71_14555 (dnaE)
03440 Homologous recombination
AYI71_14555 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lor03032
]
AYI71_14555 (dnaE)
03400 DNA repair and recombination proteins [BR:
lor03400
]
AYI71_14555 (dnaE)
Enzymes [BR:
lor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AYI71_14555 (dnaE)
DNA replication proteins [BR:
lor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AYI71_14555 (dnaE)
DNA repair and recombination proteins [BR:
lor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AYI71_14555 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AMS09842
LinkDB
All DBs
Position
complement(2933826..2937125)
Genome browser
AA seq
1099 aa
AA seq
DB search
MGFVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLH
PVIGVSLPLTFAEGTLNVTLLAKGAVGYQNLTRLSTRAMTDRANQPLTIEDLWEVSDDLV
VIVAPQLMLLGMSEQTYAQLGEVADYLGINLDFTAAERQDLQAVAERCGLPLIALEPVEY
LNQDDYFATQVLRAIKAGHTIEDPLKASQRTGRHWLRPADQVLAAYQAAGLAEAAAQTVA
VAERCQVHFADQTPVLPDFPTPAGQGVADYLRELCQRGLAKRKLTGEPAKYQVRLEHELT
VIHQMGFDNYFLIVWDLMNFAHQHQILTGPGRGSAAGSLVAYALEITDVDPLQYGLLFER
FLNPERAQMPDIDLDLPDNRREEVLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFN
LPKYQVDSLSQVIDRVKEPHQTLANLLESAQPVQNLARDSKLVACLLEVAAKLEGLPRHD
SIHAAGVVLAAEPLIKTVPLQAGNEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVET
ALNLIHQHQPDFDLTHIALNDRPTLALFDRGQTSGIFQFESSGIRQTLVNLNPDNFEEIV
AVNALYRPGPMDNINHFIARKKGQEPVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGG
FSLGEADLLRRAMSKKKLATMASMKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRS
HAVAYSKMAFEMAYLKVHFPAEFLAALMETDPDTSKVWAYFSEAKQLGITTHGPAINQSQ
ERVSLVDQELWLGLDMIKGLRRDFIRVIIEERNQHGPYQDLPDLVNRLDAKWHKEALFVP
LIDAGALDHLGYNRAEMAEGLKAILEGAEYAGLGLGMAPVVAQRNEYPLAVRLAREHAVL
GTYLSGHPVSQYQDLRTKLKLPTVAQLRPNQRVRLVLMVTRMRKVTTKREHKPMAFLTAS
DETGAVEVTIFNRLFTQLEGELRVNGIYLITAKTEQREGQVQLLADQLTDAQVVNRELHP
ADHRWVLRLPSGVAQTTVTDGIKALAKEHAGNVPVVIYDPVTQKATQLPGQLWLAKQRVV
QEGLINLVGRSNLAFQVLS
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgtacccttagccgttaagagtatgtactccctactagaggcgccggttcgc
cccgcggagctggtggcggtagctaaagagcggggctaccaggcggtcggccttgttgat
gcgcgggtcttgtacggggcggttaacttcgttcgccgggctaaccaagccgggctacac
ccggtgatcggtgtcagcctaccgctcacctttgcggaggggaccctgaacgtcaccttg
ctggccaagggggcggtgggctaccaaaacctgacccgcctctcgaccagggcgatgacc
gaccgggccaaccaaccactaaccattgaagatttatgggaggtttcagacgacctggtc
gtgatcgtggccccgcagttgatgttgttgggaatgagtgagcaaacgtacgcccagctc
ggggaagtggccgactacctggggattaacctcgatttcacggcggccgaacgccaggac
ttacaggccgtcgccgagcgctgtgggctgcccctaattgccctcgagccggtcgagtac
ctaaatcaagatgattactttgccacccaggtcctgcgggcgatcaaggccggccacacg
attgaagatcccctcaaggccagtcagcgaacgggtaggcactggttgcggccggctgac
caggtattggcggcttaccaggcggcggggcttgcggaagcggcggcccaaacggtggcg
gtagccgaacggtgccaggtccactttgccgatcaaacacctgtcctgcccgactttccg
actccggccggccagggggtggctgactacctgcgcgaactgtgtcagcgggggttggct
aagcgaaagttgaccggggagccagccaagtaccaggtccgcttggagcatgaattaacc
gtcattcaccagatgggctttgacaactactttttgattgtctgggacttgatgaacttt
gcgcaccaacaccagatcctgaccggacccggccgggggtcggcggccgggtccttggtg
gcttacgccctggaaattaccgacgtcgacccactccaatacgggctcttgtttgaacgg
ttcttgaacccggagcgtgcccagatgccagatatcgatttggacctgccggataaccgg
cgcgaggaggtcttaaactacctccaccaccactacggtcacgaacgagttgcccaaatc
atcaccttcggcagcttggggaccaagcaagtcctgcgcgacgtcagccgggtctttaac
ctacccaagtatcaggtcgactcgctcagccaggtgatcgaccgggttaaggagccccac
cagaccctcgccaacctgttggaaagcgcccagccggtccagaacctggcccgcgattcc
aaactcgtggcctgcctgctggaagtggcggccaagctagagggcttaccccgccacgat
tcgattcacgccgccggggtcgtcttggctgccgaacctttgatcaagacggtgcctttg
caggccggtaacgagccgggggcgatgctcgtgacccagtttgaaaaagacaccgtcgaa
tcactggggctactcaaaattgacctgctgggtttgcggaacttaacgacggtggaaacg
gcgcttaacttgatccaccagcaccagccggactttgacctcacccacattgctttaaat
gaccgaccgacgctggccctttttgaccgcggccagaccagtgggatctttcagtttgaa
tcaagtgggatccgccaaaccttggtcaacttgaacccggataactttgaagagattgtc
gccgtcaacgccctttaccggccgggcccaatggacaacatcaaccacttcatcgccaga
aagaagggtcaagagccggttaacctaccggctaaggaactagccccgattcttgctccg
acctacggaatcttggtttaccaagaacaagtcatgcaggtggcggcggtgatggggggc
tttagcctgggcgaggccgacttattacggcgggcgatgagcaaaaagaaactggcgacc
atggcgagcatgaaggaggccttcttagccggggccaacaagcggggctacccgaacgcc
gttgccgaacaggtctttgcctacatcgaccagtttgccaactacggttttaaccgctcc
cacgcggttgcctattcgaagatggcctttgaaatggcctacttaaaggtccacttcccg
gccgaattcctagcggccctgatggaaaccgacccggataccagtaaggtctgggcctac
tttagcgaggctaagcaactagggattaccacccacggaccggcgatcaaccagagccaa
gaacgggtgagcctagtcgaccaggagttgtggctggggttagacatgattaaaggcctg
cgccgtgactttattcgggtaatcattgaagagcgcaaccaacacggcccctaccaggac
ttgcccgacctggtcaatcgcctcgacgccaagtggcacaaggaagccctctttgtaccc
ctaattgacgcgggggccttggatcaccttggttacaaccgggctgagatggccgagggt
ttaaaggcgattttggagggcgccgagtacgccggtttgggcttggggatggcgcccgtg
gttgcccaacgcaatgagtacccgctcgctgttcgcttggcccgcgaacacgcggtcctc
ggaacttacctttcggggcacccggttagtcagtaccaagacctccgaaccaagttaaag
ttaccaaccgtggcccagctacggcctaaccagcgggtacggttggttttaatggtgacc
cgaatgcgaaaggtaacgaccaagcgcgagcacaaaccaatggcctttttaaccgctagt
gacgaaaccggggccgttgaagtgacgatctttaaccgcctcttcacccagctcgaaggt
gagttaagggtcaacggaatttacttgattacggccaagaccgagcaacgagagggccag
gtccaactcttagccgatcaattgaccgacgcccaggtggtcaaccgggaattacacccg
gccgaccaccgttgggtactccgcttacctagtggggttgcgcagaccacggtgaccgac
gggatcaaggccttggctaaggaacacgccggcaatgtcccggtggtgatttacgacccg
gtcactcaaaaagccactcaactgcccgggcaactgtggttagctaagcaacgggtggtc
caagagggtttgattaacctggtggggaggagcaatttggccttccaagtgttaagttag
DBGET
integrated database retrieval system
