Limosilactobacillus oris: AYI71_15745
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Entry
AYI71_15745 CDS
T04391
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lor
Limosilactobacillus oris
Pathway
lor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYI71_15745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lor03019
]
AYI71_15745
03009 Ribosome biogenesis [BR:
lor03009
]
AYI71_15745
Enzymes [BR:
lor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AYI71_15745
Messenger RNA biogenesis [BR:
lor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYI71_15745
Ribosome biogenesis [BR:
lor03009
]
Prokaryotic type
rRNA helicases
AYI71_15745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
LidA_Long_CC
Cas3-like_C_2
GRP
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AMS10151
LinkDB
All DBs
Position
unnamed1:complement(6565..8061)
Genome browser
AA seq
498 aa
AA seq
DB search
MKFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII
EHVDTDNPNIQALIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKHHP
QILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAERQTLLF
SATMPPEIKRIGEQFMTNPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPD
LTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKNGDLDILVATDVAA
RGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEIEKLTRV
RMLPLKPPSAEEAFKGQVASAFNDIDELIAQDSTDRYKEAAEELLESHDAMDLVAALLND
MTKEAASEVPVKITPERPLPRRHHGGKRTDYHGGNHRHYNGNRRGNGRYRSRGHRGDNHG
RSHSSRHAFNIRHRKDKE
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttagcgaattaggtttatcgcaaagtttattaaaagcaattaagcggagcggc
tacgaagaggccaccccaattcaggaacagacgattccaatggtcttgaagggacaggac
gtcattggccaggcccagacagggacagggaaaaccgccgcgtttggtttaccgattatt
gagcacgtcgatacggacaacccaaatatccaagcgctgattatctccccgactcgtgaa
ctggcaatccaaactcaggaggaactttaccgcctgggcaaggataagcatgtccgggtt
caagtagtatatgggggtgcggatattcgccggcagatcaagagtctcaagcaccatccc
caaatcctcgtcggaactcctggccggctgcgtgaccacattaaccgtcataccgtcaaa
ctgggtcacatccaaacccttgtattagacgaagccgacgaaatgctgaacatgggcttc
ttagaagacattgaagcgatcatcaaggaaacgccagctgagcggcaaaccctccttttc
tcggcgacaatgccgccagaaatcaagcggattggcgagcagttcatgactaacccggaa
actgtccggattaaggctaaggaactgacgaccgacctggttgaccagtactacgtccgg
gcccgggattacgaaaagtttgacatcatgacccggctgatcgacgtccaagatccggac
ttgacgattgtcttcggacgtaccaaacggcgggttgatgagctgtcaaagggactgatt
gcccgggggtacaacgccgccggaattcatggtgacctcacccaggaccgacgcacgaag
atcatgaagaaattcaagaacggggacctggatatcctggttgcaaccgacgtggccgca
cggggcctcgatatttccggtgtgacccacgtttataattacgatatcccatccgatccg
gatagctatgtccaccgaattggacggacaggtcgggccggacaccacggaacgtcactg
acctttgtaacgccaaatgaaatggaatatttgcatgagattgaaaaactgacccgggtg
cggatgttaccactgaagcccccatctgccgaagaggcctttaagggacaggttgccagc
gcctttaacgacattgacgagttaattgcacaagattccaccgatcggtataaagaggcc
gcagaggagctcctggagagccatgacgcaatggacctggttgcagcccttctcaatgat
atgacgaaggaggcggctagcgaggttccggttaagattactccagagcgcccgttgcca
cgtcgtcaccacggtggtaagcgtactgattaccatggtggcaaccaccggcactacaat
ggtaatcgacggggaaatggccgttaccgttcacggggtcaccgcggtgataatcacggt
cgcagccactccagccgccacgcctttaatatccgccaccgtaaggataaggaataa
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