Leptotrichia sp. oral taxon 847: AXF11_04900
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Entry
AXF11_04900 CDS
T04653
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lot
Leptotrichia sp. oral taxon 847
Pathway
lot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXF11_04900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lot03019
]
AXF11_04900
Messenger RNA biogenesis [BR:
lot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AXF11_04900
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
RE_HaeIII
Asparaginase_C
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AMD94985
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Position
complement(1056765..1058651)
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AA seq
628 aa
AA seq
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MSDREKREAGNSNSTIKRYFSKKEDTNKIKSNLKRFRRKNTNRRHLDEKNETRYVPLANN
RNRHVDKKNFKDETRDEKMYVIPLGGLEEVGKNMTAFQYKDEIIVVDAGLTFPEDEHLGI
DVIIPDFAYLEANKNKIKGLLLTHGHEDHIGAVPYFYQKLGTENIPMYGGKLTLALAKAK
FEKKDAKLPKEKVITGRNILKISKYFTVEFISVTHSIADCYAICIKTPAATILHSGDFKV
DLTPVDGEGFDFGRLAQLGEEGVDLLLSDSTNAQIPGFTPSERTVGESLKDEFSKAKGRI
ILAAFASHVHRLQQIVNIAHSHGRKIAIDGRSMIKIFEICSELGYLKLPKDIMIDIEKVE
THPADKVLILCTGTQGEPLAALSRIANGTHKYITLRQGDTVVISATPIPGNEKAATKNIN
QLMKRDASVVFEKGIGIHVSGHGCQEEQKLMINLVKPKFFLPVHGEYAMIKKHKELAVAV
GVEGKNVLLAENGAKFELSRSNFRQVGRVPSGATFIDGFGIGDVGNAVLKDRQNLADDGI
VIISILKYKNGTFNKNVELVTRGFVYNKDAESLLSKTKELVKKELCVLESEKVKEIGKIK
QRIRVKIGDFLIRATDRDPIILPIIMDN
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatagagaaaaaagagaagcaggaaattcaaattcaacaataaaaagatacttt
tcaaaaaaagaggatacaaataaaataaaatccaatttaaaaagattcagaagaaaaaac
acaaatagaagacatttagatgaaaaaaacgaaactagatatgttccgcttgcaaacaat
agaaatagacatgttgacaaaaaaaattttaaagatgaaacaagagatgaaaaaatgtat
gtaattccattggggggattggaagaagtcgggaaaaatatgacagcgtttcaatataaa
gacgaaataatcgtagtagatgcgggacttacattcccagaagacgaacatttgggaata
gatgtcataatacctgattttgcgtatttagaagcaaataagaataaaattaaaggatta
cttttgacacacggacacgaagatcatattggagcagtgccatatttttatcaaaaattg
ggaacggaaaatataccgatgtatggtggaaaattgactttggcacttgcaaaagcaaaa
tttgagaaaaaagatgcaaaacttccaaaagaaaaagttataactggaagaaatatttta
aaaatttcaaaatattttacagtggaatttataagcgttacgcacagtattgctgattgc
tatgctatttgcataaaaacgccggctgcgacgatcttgcactcgggagattttaaagtg
gatttgacgcctgtcgacggagaaggatttgatttcggaagacttgcgcaacttggagaa
gaaggggtagatttacttttgtcggatagtacaaatgcacaaattcctggattcacacca
tctgagagaactgttggggaaagcttgaaagatgaattttcaaaagcaaaaggaagaatt
atacttgcggcatttgcatcacacgttcatagattgcaacagattgtaaatattgctcat
tctcatggaagaaagattgcgattgatggaagaagtatgattaaaatatttgaaatttgt
tcagagttaggatatttaaaacttccgaaagatataatgatagatattgaaaaagtggaa
acacatccagcagataaagtgctaattttatgtactggaactcagggagagccacttgcg
gcactttcaagaatcgcaaatggaactcataaatatataacgttaagacaaggagataca
gttgtgatttcggcgacacctattccaggaaatgagaaagctgcaacaaaaaatatcaat
caattgatgaaacgggatgctagtgttgtatttgaaaaaggaattggtattcacgtatcg
gggcacggctgccaagaagagcagaaacttatgataaatcttgtaaaaccaaaatttttc
ttgccagtccatggggaatatgcaatgattaaaaaacataaagaacttgcagttgctgtg
ggagttgaaggaaaaaatgtacttttagctgaaaatggagcaaaatttgaactttccaga
agtaattttagacaagttggaagagtgccaagtggagcaacattcattgatggatttgga
ataggcgacgtaggaaatgccgttttaaaagacagacagaatttagcggacgatggaata
gtaattatttctattttaaaatacaaaaatggaacttttaataaaaatgtggaacttgtt
acaaggggatttgtatacaataaagacgctgaaagcttactttctaaaacaaaagaatta
gtgaaaaaagaactttgtgttttggaaagtgaaaaggtaaaagaaattggaaagataaaa
cagagaattagagtaaaaattggggatttcttaattagagcaactgatagagatccaata
attttaccaataattatggataactaa
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