Legionella pneumophila 2300/99 Alcoy (serogroup 1): lpa_00138
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Entry
lpa_00138 CDS
T01232
Symbol
vacB
Name
(GenBank) Exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lpa
Legionella pneumophila 2300/99 Alcoy (serogroup 1)
Pathway
lpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lpa_00138 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpa03019
]
lpa_00138 (vacB)
03016 Transfer RNA biogenesis [BR:
lpa03016
]
lpa_00138 (vacB)
Enzymes [BR:
lpa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
lpa_00138 (vacB)
Messenger RNA biogenesis [BR:
lpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
lpa_00138 (vacB)
Transfer RNA biogenesis [BR:
lpa03016
]
Prokaryotic type
tRNA degradation factors
lpa_00138 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADG23350
LinkDB
All DBs
Position
112576..114756
Genome browser
AA seq
726 aa
AA seq
DB search
MSKKSKDPFYKREREKYAEPIPSREYIMEILDEYGRPMSRSKLFDKLDLSSESQQESLGF
RLKAMLRDGQIMQDRRGRFCLLQKINLLRGTVQGHPDGFGFFIPDDGSEDMVLSAKEMRA
VMHGDMVLAYQSGLDRRGRPEAKIHEVLEHANTTVVGRFFTDHGVNFVIPDSKRLTQDIS
IPQEFIGEAKNGQIVLVELIAYPNKRSQAIGRVIHILGEHMAPGMEIQVAIHAHGIPFEW
PDDVLAEVGKIPQQISEEQLKGRTDLRNLPFVTIDGEDAKDFDDAVYCYKKPKGGFQLYV
AIADVSHYVAKDSALDQEAARRGNSVYFPGKVVPMLPEALSNGVCSLNPHVDRLCMVAEL
SITQEGKISRSRFYRAVIHSHARLTYTSVGAWLEQGKADEKHQALWPMLESLYDLYHVLL
DTRRLRGAMDFETTETRIEFDENKKIKCIVPVIRNDAHKLIEECMLAANVATARFLEKAE
IPTLYRVHAAPEEDKITALRQFLGELGLSLGGGRKPGPKDFQRTMNMIGDRPEKHLIETV
MLRSLKQAQYVESNEGHFGLAYSAYTHFTSPIRRFPDLLIHRAIGHLLDNHPVYEFEYSH
EDMNRLGKHSSMTERRADEATREVITWLKCEYMQDKLGQVFKGRISAVTSFGIFVELDEI
YVEGLVHVTSLKNDYYTFDSAKHRLIGARGGQVYRLGDKMTVLVARVDLNERKIDFEPVE
DEVCNE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaaaaatccaaagatcccttttataagagggagcgcgaaaaatacgccgagcca
attccaagccgggaatacatcatggaaatcctggatgaatacggtaggccaatgtctcgc
agtaaactgtttgataaattggatttgagctctgagagccagcaggaatccttgggtttt
cgcttgaaggccatgctgcgtgatggccaaatcatgcaggacaggcgtggacgcttttgt
ttattgcaaaaaattaatttattgcgtggaacggttcaaggccatcctgatggttttgga
tttttcatcccggatgatggttctgaggatatggtgctctctgctaaagaaatgagggct
gtcatgcatggagatatggtgcttgcctatcaatctggattggatagaagaggaaggcca
gaagctaaaatccacgaagtcctggaacatgcgaataccacggttgtaggtcgatttttt
actgatcatggcgtgaattttgtcattcctgatagcaaacgtctgactcaggatatttca
attccccaagaattcattggcgaggccaaaaatggccaaatagtactggttgagttaatc
gcataccctaacaagcgttcgcaagctataggcagagtaatccatattttgggtgagcat
atggctcctggcatggaaattcaggtggcaatccatgcccacggcattcctttcgaatgg
ccagatgatgttcttgcggaagtgggtaaaattccacaacagatttccgaggaacaatta
aagggtcgaaccgatttgcgtaatcttccttttgtaaccattgacggggaagatgcaaaa
gattttgatgatgctgtgtattgttacaaaaagcccaaaggcggcttccaattgtatgtc
gctatcgcagacgtcagtcattatgtggcgaaggattctgctttggatcaagaagcagca
aggcgaggaaattcagtttattttcccggtaaagtggtgcccatgctaccagaggcctta
tccaatggcgtttgctcattaaatcctcatgttgaccgcttatgtatggtggctgagtta
tcgattacccaagaaggaaaaatatcccgatcccgcttttatcgggcagtgattcattct
catgctcgtttgacctacacgtcagttggggcatggttggaacaaggcaaggcagatgaa
aaacatcaagccttgtggcctatgcttgagtctctttatgatttatatcatgttctgctc
gatacccgtagacttagaggtgctatggatttcgagactacggaaactcgtatcgaattt
gatgaaaataagaaaataaaatgtatcgtgcctgtaattcgtaatgacgctcataaatta
attgaagaatgcatgctggcagcgaatgttgcgacagcaagatttttagaaaaggctgaa
attcctactttataccgagttcatgcggctcctgaagaggataaaattactgcattgagg
cagtttttaggggagctgggattgtcattgggaggggggagaaaacctggacccaaagat
tttcagcgcaccatgaacatgattggtgaccgaccagagaagcatcttattgaaacggta
atgctgcgttctttaaaacaggctcagtacgttgaatcgaatgaaggtcattttggtttg
gcctattccgcttacacgcattttacatcaccaatcagaagatttcctgatctattaatt
cacagagcaatagggcatttactggataatcatcctgtttatgagtttgaatatagccat
gaagatatgaatcgtttgggtaaacattcctcgatgacggagcgccgtgctgatgaagcg
acccgggaagtgattacctggttaaagtgcgagtatatgcaagacaaattggggcaggta
tttaagggtcgaatatccgctgtgaccagctttggtatttttgtggagcttgatgaaatt
tatgtagaaggcttggttcatgtcacttctttaaaaaacgattattatacgtttgactct
gcaaaacatcgtttaataggggctcgtggcggtcaggtttatcgtttgggagataaaatg
actgtgttggtagctcgtgttgatttaaacgaacgtaaaatagattttgagcctgtcgag
gatgaagtttgtaatgaatga
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