Legionella pneumophila 2300/99 Alcoy (serogroup 1): lpa_00530
Help
Entry
lpa_00530 CDS
T01232
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpa
Legionella pneumophila 2300/99 Alcoy (serogroup 1)
Pathway
lpa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
lpa_00530 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpa03021
]
lpa_00530 (rpoC)
03400 DNA repair and recombination proteins [BR:
lpa03400
]
lpa_00530 (rpoC)
Enzymes [BR:
lpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
lpa_00530 (rpoC)
Transcription machinery [BR:
lpa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
lpa_00530 (rpoC)
DNA repair and recombination proteins [BR:
lpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
lpa_00530 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ADG23620
LinkDB
All DBs
Position
423414..427637
Genome browser
AA seq
1407 aa
AA seq
DB search
MKKAPVMSDLLGILKQQGQSEEFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERD
GLFCAKTFGPVKDYECLCGKYKRLKHRGVICEKCGVELALAKVRRERMGHIELASPVAHI
WFLKSLPSRIGLLLDMTLRDIERVLYFEAFVVVDPGMTELERGQLLNDEAYLDAMEQYGD
EFDARMGAEAIRDLLRQIDLEDEIRNLREELPTTNSETKIKKITKRLKLLEAFYESGNKP
EWMIMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRN
EKRMLQESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPTLKLHQCGLPKKMALELFKPFIFSKLEFRGLATTIKAAKKMVEREESVVWDILDD
VIREHPILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTL
EAQLEARSLMMSTNNILSPASGEPIIVPSQDVVLGLYYLTREKVNALGEGKIYSSAQEAQ
NFYEAGHLDIHAKIKIRMPKEDGETGYHLVETTVGRAILAEILPKGMPFDYINRTMTKKV
ISKVIDSCYRKFGLKETVIFADQLMYTGFKYATRSGASIGIEDMEIPDDKASIIEHADNE
VREIESQFRSGLVTNGERYNKVIDIWSRTNELVAKSMMSKIATEEVTDAKGNKVRQESFN
PIFMMADSGARGSAAQIRQLAGMRGLMAAPDGSIIETPITANFREGLNVFQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEDDCGTDTGILMQPLIEGGDIVEPLHERVL
GRVVASDVYIPTQTEPVVKAGTLLDEEWVEKLEKHGVDQVMVRSPITCQTRFGLCAKCYG
RDLARGHLVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASRATAANNIQIKTKGVIRL
HNIKTVTHENKNLVAVSRSGEVTIVDEFGRERERYKVPYGAVISAQDNSPVEAGQVIATW
DPHTHPVISEVSGRLKFVDLIDGITMNRQTDELTGLSNIVIIDAKQRSAAGRDLRPMVKL
VTDEGDDIYLAGTNVPAQYYLPVDAIVNFEDGSLVGIGDVIARIPQERSKTRDITGGLPR
VADLFEARKPKDSAVMAEVSGLVNFGKETKGKRRLIINVSEDQCHEELIPKWRHISVFEG
EHVERGEIIAEGALNPHDILRLLGVGALANYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RKRVITFAGDSKFLVGEQVEESAMLQENDKLLAEGKQIARGTPILLGITKASLATESFIS
AASFQETTRVLTEAAVSGKVDELRGLKENVMVGRLIPAGTGYTYHQSRKAKRARAAAGGD
SSATHTVTASDVEHALSEALNADNHEH
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagcaccagtaatgagtgacttacttggtattcttaagcaacaaggtcaaagt
gaagaatttgatgcaataaaaattgcattggcgtcacctgaattaattcgatcatggtcc
tacggcgaagttaaaaagcctgaaacaatcaactacaggacatttaagcctgaaagagat
ggtttgttttgtgctaaaacttttggtcctgttaaagattatgaatgtttgtgtggaaag
tacaagcgattaaagcatcgtggtgttatttgcgagaagtgtggggttgaattggctctt
gccaaagtgagacgagaaagaatggggcatatcgaactcgctagcccagtcgctcacata
tggttcttaaaatctttaccatcaagaattggtttgctcctcgatatgactctaagagat
atcgagagagtactctattttgaagcttttgtcgttgttgatcctgggatgacagagctt
gaaagagggcaactacttaacgacgaagcctatcttgatgcgatggaacagtatggtgat
gagtttgacgcgcgtatgggcgcagaagcaattcgtgatttattgcgccaaattgatctc
gaagatgaaattagaaatttacgtgaagaacttccaacaactaactctgagacgaagatt
aaaaaaatcaccaaaagactcaagttattagaagctttttacgagtcaggaaataaacca
gaatggatgatcatggatgtacttccagtgcttccacccgatttgaggccattggttccg
ttagatggtggacgttttgctacttcagacttgaatgatttatacaggcgcgtcattaat
aggaacaaccgactaaaacgcctgctggatctgaatgcgcctgacattatcgttcgtaac
gaaaaacgaatgctgcaagaatccgtagatgctttacttgataacggcagaagaggtcgt
gccatcactggtacaaataagagacctcttaaatcactggcagatatgattaaaggtaaa
cagggtcgtttcaggcaaaatctcttaggtaagcgtgtcgactactctggacgttcagtt
attgtagttggaccaactttaaaattgcaccaatgcggattgcctaaaaaaatggcgttg
gagttattcaagccatttatattttccaaattggaatttagaggtttggcaactactatc
aaagcggccaagaaaatggtcgaaagagaagaatcggtggtttgggatatattagatgat
gttattagagaacatcctatccttttaaaccgtgctcctaccttgcatagattaggtatt
caagcatttgagcctgttttaattgaaggtaaagcgatccagctccatcctttggtatgt
acagcatacaatgctgacttcgatggagaccaaatggctgtgcacgtgcccttgacactg
gaagcgcagctggaagctcgttcattgatgatgtctacaaacaatatattatctccagcc
agtggtgagccaattattgttcccagtcaggacgtcgtccttgggttatactatttaaca
cgagaaaaggttaatgcattaggcgaaggaaaaatatattcaagtgctcaggaagcgcaa
aatttctatgaagcaggtcatttggatatccatgcaaaaattaaaattcgtatgcctaaa
gaagatggtgaaactggatatcatttggttgagacaacagtcggacgcgcaattttagct
gagattttgcctaaaggaatgccatttgactatataaaccgtacaatgacaaaaaaggtt
atctcaaaagtaatagatagctgttaccgcaaattcggcttgaaagaaacagtcattttt
gctgatcagttaatgtataccgggtttaaatacgccacacgatctggagcatccataggt
attgaagacatggaaataccagatgataaggccagtattattgaacacgccgataatgaa
gtaagagaaatcgagtctcaattcagatcgggtttggtaacgaatggtgaacgatacaac
aaggtaattgatatttggtcaagaactaatgaattagttgccaaatcaatgatgtctaaa
attgcaacagaagaagtcactgatgcaaaaggcaacaaagtaagacaagaatcatttaac
ccaattttcatgatggctgattctggagctagaggttctgctgctcagatacggcagctt
gccgggatgcgaggtttgatggcagctccagatggctcaatcattgaaacgcctatcact
gcaaacttccgcgaaggtttgaatgtattccagtactttatttctacacacggagctcgt
aagggtttggcagatacggcgttaaagacagcaaactcagggtatctgacacgacgcttg
gtagatgttgcgcaggatgttgttattaccgaagatgattgtggtactgatacaggtatt
ctaatgcaaccactgattgaaggtggtgatattgttgagcctttgcatgaacgcgtcctt
gggcgggtggttgcttcagatgtctatattcctactcaaactgaaccagtagtcaaggct
ggaactttactggatgaagaatgggttgaaaaattagagaagcatggggtagaccaggtt
atggtcaggtcaccaatcacttgtcaaacaagatttggtctttgtgcaaaatgctatggt
agagatcttgctcgtgggcatcttgttaacacaggtgaagcagttggtattatcgcagca
caatcaatcggtgagccaggaacacagttaaccatgcgtactttccacattggaggtgct
gcatcaagggcaacagctgcgaataatattcaaattaaaacgaaaggggttattcggtta
cataatataaagaccgtaactcatgagaataaaaacctggtggcagtttctcgctcaggt
gaggtaactattgtcgatgagttcggacgagaaagagagcgctataaagttccttatggt
gcagtaatttcagcacaggataattcccctgttgaagctggtcaggttattgcaacgtgg
gatccccatacgcatccggttatttccgaagtgtcagggcgtttgaagtttgttgatctt
attgatggcattacaatgaatagacaaactgatgaattaaccgggttaagcaatattgta
ataattgatgccaaacaacggagtgcggcaggtcgagatttgcgcccaatggtaaaatta
gttacagatgagggggatgacatatatcttgctggaaccaatgtcccggcacaatattat
ctacctgtcgatgccattgtgaactttgaagatggaagtctggtgggaataggggacgtt
attgcccgtattccgcaggaacgttctaaaacccgagatattaccggaggtttgccaaga
gtagcggacttatttgaagccagaaaaccaaaggattctgcagtaatggcagaagtatca
ggattggttaattttggtaaagaaaccaaaggtaagcgacgcttgattatcaatgtatcg
gaagatcaatgccatgaagagctgattcctaaatggcgtcatatttcagtgtttgaaggt
gaacacgtagagcgcggtgaaatcatcgcagagggtgcacttaatcctcatgatatattg
cgcttattaggtgttggagcgctggctaattacattgtaaatgaggtccaggacgtctat
cgtttacaaggtgtgaaaattaatgataaacacattgaagtaattgtcagacaaatgcta
cgtaagagagtcattactttcgctggtgactcaaaattcctcgtaggagagcaagtagaa
gaaagtgctatgcttcaggaaaatgataaacttctagctgaaggaaagcagattgcgcga
ggtactcctattttactaggtatcacaaaagcttcattagctacagaatcgtttatatca
gccgcttcattccaagagacaaccagagtcttgactgaagcagcagtaagcggaaaagtt
gatgaattgcgtggtttaaaagaaaacgtgatggtaggtcgactaattccagcaggaaca
ggttatacttatcatcaaagccgaaaggcaaaaagagcaagggctgcagcaggcggagac
agttcagcaacacacacagttactgcaagtgatgttgaacacgcgttgagtgaagcatta
aacgcggataatcatgaacattaa
DBGET
integrated database retrieval system
