Lacticaseibacillus pabuli: PQ472_02305
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Entry
PQ472_02305 CDS
T09936
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpab
Lacticaseibacillus pabuli
Pathway
lpab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQ472_02305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpab03019
]
PQ472_02305
03009 Ribosome biogenesis [BR:
lpab03009
]
PQ472_02305
Enzymes [BR:
lpab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PQ472_02305
Messenger RNA biogenesis [BR:
lpab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PQ472_02305
Ribosome biogenesis [BR:
lpab03009
]
Prokaryotic type
rRNA helicases
PQ472_02305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
NAT10_TcmA_helicase
LidA_Long_CC
Motif
Other DBs
NCBI-ProteinID:
WDF83085
UniProt:
A0ABY7WSC2
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All DBs
Position
506472..508073
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AA seq
533 aa
AA seq
DB search
MKFAELGLDQDLLAAVERAGFEEATPIQAQTIPLALSGKDVIGQAQTGTGKTVAFGLPLT
QKVDTSDPSVQSLVISPTRELAVQTQEELYRLGRDKHTKVQAVYGGADIRRQIKALSNHP
QIVVGTPGRLLDHINRHTLKLQNLKMLVLDEADEMLDMGFVEDIESILASAPDNRQNLLF
SATMPAPIMKITNKFMNNPITVKIESKELTADTIEQYYVRAKEFEKFDIMTRLFDVQGPE
LALIFGRTKRRVDELTKGLQARGYNAEGIHGDLSQQKRMQVLRQFKNGELDFLVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGISVTFVSPNEMDYLHTIEDLTKK
RMLPLKPPTQAEAFKGQMNTTIASVKEQAASGDLDRFEDEASKLLEQFDALQLVEAYLKE
VAPDDASTVPVKITPERPLPRHGRGGGQRRWGHGNGGGNRGGNSHGGYRGGNRHEGGNYR
GGDRREGGNKRYGNDRKREGGNNSFRDGGNRYSGKRDGVKRGYNGNRKNNSKD
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttgccgaattaggccttgatcaggacttgcttgccgcagttgaacgggccggc
ttcgaagaagctacccccatccaggcgcaaacaattccgctcgcattgtctggtaaagat
gttattggacaagcgcagacagggactggtaagacggttgcttttggcttgccgttgacc
cagaaagtcgacacttctgatcctagcgttcagtcactggtcatttcaccaacccgtgaa
ctggctgtccagacgcaggaagagctttaccgtcttggtcgcgataagcacaccaaggtt
caggctgtctacggtggtgctgatatccgccgccagatcaaagctctgagcaaccaccca
cagattgttgtggggacaccaggtcgtctgcttgaccacatcaaccgccacaccttgaag
ctgcaaaacctcaagatgctcgtgctggatgaagccgatgaaatgctcgacatggggttt
gttgaagacatcgaaagcattttggcaagtgcgcctgacaaccgtcagaacctgctcttc
tctgcaacgatgcctgcaccaatcatgaagattaccaacaagttcatgaacaacccaatc
accgttaagattgaaagcaaggaactgactgcagatactatcgagcagtactacgtccgt
gccaaggaatttgaaaagtttgacatcatgacccgtctcttcgatgttcagggcccagag
ctggcactgatcttcggtcggaccaagcgtcgtgttgacgaactcaccaagggtctgcag
gcccgcggttacaacgctgaaggtatccatggggacttgtcccagcagaagcggatgcag
gttttgcgccagttcaagaacggcgaactggacttcctggttgccactgacgttgcggcg
cgtggtctcgatatctctggtgtgacccatgtgtacaactacgatatccctcaggaccca
gactcctacgttcaccgtattggtcgtaccggccgtgccgggaagtccgggatttccgtt
acgttcgtttcaccaaacgaaatggactacttgcacaccatcgaggacttgaccaagaag
cggatgctgcctctcaagccaccaacgcaagctgaagccttcaagggccagatgaacacg
accattgcgagtgttaaggaacaggctgcttctggcgacctcgaccgttttgaagacgaa
gcaagcaagctgctcgaacagtttgatgctctgcagctggtggaagcttacctgaaggaa
gtcgcacctgatgatgcgtcaaccgtcccagttaagataaccccagaacggccattgcct
cgtcatggtcgcggcggcggtcagcgtcgttggggtcacggtaacggcggcggcaatcgc
ggcggtaacagtcacggtggctaccgtggcggcaatcgtcacgaaggcggcaactaccgc
ggtggcgaccgtcgtgaaggcggcaacaagcgctacggtaatgaccgcaaacgcgaaggc
gggaacaacagcttccgcgatggtggtaaccgttactccggcaagcgcgatggcgtgaag
cgcgggtacaatggtaaccgtaagaacaacagcaaagactaa
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