Lacticaseibacillus pabuli: PQ472_03870
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Entry
PQ472_03870 CDS
T09936
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lpab
Lacticaseibacillus pabuli
Brite
KEGG Orthology (KO) [BR:
lpab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpab03019
]
PQ472_03870
03009 Ribosome biogenesis [BR:
lpab03009
]
PQ472_03870
Enzymes [BR:
lpab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PQ472_03870
Messenger RNA biogenesis [BR:
lpab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PQ472_03870
Ribosome biogenesis [BR:
lpab03009
]
Prokaryotic type
rRNA helicases
PQ472_03870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Flavi_DEAD
DFF-C
Motif
Other DBs
NCBI-ProteinID:
WDF83387
LinkDB
All DBs
Position
863008..864366
Genome browser
AA seq
452 aa
AA seq
DB search
MENQFKQYDLRPELIEALTNNDFVKPTPIQEKVIPKALRGKSIIGQSQTGSGKTLAFLLP
IINNVDPSENELQTVITAPSRELANQIYEAAKQLQGARDGLRIGRFVGGTDRGRQEKKLE
ENNVHIAIGTPGRILDLLTDEALMGHTVRTFVVDEADMTLDMGFLDTVDKIASTFPEKLQ
MMVFSATIPQKLQPFLKKYMSSPLIIELKPQSVIADSVDNWLIAKKGRNTNELIFKLLKI
ANPYLALIFANTKTSVDEIHDYLKHQGLRVAKIHGGVEPRERRRTMKAVAAQKYQYVVAT
DLAARGIDVKGVSHVINAEIPSDNEFFIHRVGRTGRNGMTGTAITLYAPGEENKIAELEA
MGIKFTPKAIKNDEIVDSHDRNRRVKRTKENEKLSQTMYGMLKKEQKKHKPGYKKKVRKA
VEKEAWFNRRVEKREALRANKRKNKSKGLNKA
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaccaatttaaacaatacgacctgcgtcccgaactcattgaagcattaaccaac
aatgattttgtgaagccaacgccgattcaggagaaagttattcccaaggcgctccgcggc
aaatcaatcatcgggcagtcgcagacgggctctgggaagacacttgccttcctcttgcca
attattaacaacgtcgacccgagcgaaaacgagcttcagacggttattacggcgccaagc
cgtgagctggccaaccagatatacgaagctgccaagcagttgcagggtgcccgtgacggc
ctccgcatcggccgctttgtgggtgggaccgaccgtggtcgccaggaaaagaagctcgaa
gaaaacaacgtgcacatcgccatcgggacaccaggtcgaattctcgatctgttgactgac
gaggcgctcatgggtcacaccgtgcgcactttcgtggtcgatgaggcggacatgacgctc
gacatgggtttcctggacacagtggacaagattgccagcaccttcccagaaaagttgcag
atgatggtcttctccgcaacgattccgcagaagttgcagccattcttgaagaagtacatg
tccagcccattaatcatcgaactgaagccacagtccgttatcgcggactctgtggataac
tggctcattgccaagaagggccgcaataccaacgagctgattttcaaactgctcaagatt
gcgaacccatatcttgctctgattttcgcaaatacgaaaaccagtgtcgatgagattcat
gattacctgaagcaccagggcctgcgtgtggccaagattcacggcggtgttgagccccgc
gaacgtcggcgcacgatgaaggccgttgcggcgcagaagtaccagtacgtcgtcgcaacc
gatctggctgcgcgcgggattgacgtgaagggtgtttcacacgtcattaacgccgagatt
ccgagtgacaacgagttcttcattcaccgtgttggtcgtaccggccgcaacggcatgacg
gggaccgccatcactttgtacgcgccaggcgaagaaaacaaaatcgccgaactcgaagcg
atgggcattaagttcacgcctaaagcaatcaagaacgacgagattgtggacagtcacgat
cgtaaccgccgtgtaaaacgcacgaaggaaaacgaaaagctgtcgcagacgatgtacggg
atgctcaagaaggaacagaagaagcacaagcctgggtacaagaagaaggtacgtaaggcc
gttgagaaggaagcgtggttcaaccgccgtgttgaaaaacgtgaggcgctgcgagctaac
aaacgtaagaacaagtcgaagggtctgaataaggcttaa
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