Lacticaseibacillus pabuli: PQ472_04285
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Entry
PQ472_04285 CDS
T09936
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lpab
Lacticaseibacillus pabuli
Brite
KEGG Orthology (KO) [BR:
lpab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lpab03009
]
PQ472_04285 (rlmD)
Enzymes [BR:
lpab01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PQ472_04285 (rlmD)
Ribosome biogenesis [BR:
lpab03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PQ472_04285 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_25
MTS
Cons_hypoth95
PrmA
RrnaAD
Methyltransf_11
DUF3325
N6_Mtase
Methyltransf_32
PCMT
DOT1
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
WDF83461
LinkDB
All DBs
Position
942278..943633
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AA seq
451 aa
AA seq
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MANLAKNQELEVNVTDLTYEGLGVAKVDGFPLFIDNALPGETVRAHITKLQKQYGFAFTK
EILKKSPDRVETKSRIYTQTGIAPLQHLSYPAQLTFKQHQIDELYKKQHLDIEVLPTIPS
PQQTGYRDKAQVPVREVNGKLETGFFKRRSHVLVPITDFYIQDPAIDEAIVIVRDLLRKY
NVPAYDEIHNGGVVRNVMVRRGHFTKMMMIVLVTRTRDLPHMAEIVSDITAALPEVASII
LNFNPKRTNVILGSRSKTVWGQDYIEDDLLGSTFRISAQSFYQVNPEQTENLYKAAIDGA
QLTGNETVIDAYSGIGTISLTMARHAKQVYGVEVVPEAVEDARVNAAANGIKNVTFKVGK
AEDVMRTWRDQKLAADVLMVDPPRKGLAPEFTEAVGSMLPGRIVYVSCNPATLARDITAL
GEFGYKATQTQPVDMFPQTQHIESVTVLTRD
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggctaatcttgccaagaaccaagaactagaagttaatgtgacagacctgacctacgag
ggtctcggtgtggcgaaggtggacggcttcccgttgttcatcgacaatgccttacctggt
gaaacggtgcgtgcacacattaccaaactgcaaaagcagtatgggtttgcgttcaccaag
gaaattttgaagaagtcacccgaccgtgtggagacgaagagccgcatttacacccaaact
gggattgcgcctctgcaacacctcagttacccggcacagttgaccttcaaacagcatcag
attgatgagctgtacaagaagcagcacctcgacatcgaagtcctgccgacgattccaagc
cctcagcaaaccggctaccgcgacaaggcgcaggtgccagttcgcgaggttaacggcaaa
ctggagacaggtttcttcaagcgccgcagtcacgtgctggtgccaatcacggacttttac
attcaggaccctgcaatcgatgaggccattgtgattgtccgggatttgctgcgcaagtac
aatgtgcccgcctatgatgaaattcataacggcggcgttgtgcgcaacgtcatggttcgc
cgcggccactttaccaagatgatgatgattgtcctcgtgacacgcactcgcgatttgccg
cacatggcagaaatcgtatccgatatcaccgcggcactgccagaagtggccagcatcatt
ctgaacttcaacccaaagcgcaccaatgtgatcttgggtagccgcagtaaaacggtctgg
ggtcaggactacatcgaagacgacctgctcggcagtacattccgtatttccgcgcagagt
ttctaccaggtgaaccctgaacaaactgaaaatctgtacaaggccgctatcgatggggca
cagctgacgggtaatgaaactgtcattgatgcttactctggtatcgggacgatttcgcta
accatggcacgtcatgccaaacaggtttacggggtcgaagtggtgcccgaagccgttgaa
gatgcgcgtgtgaatgccgctgcgaacggcatcaagaacgtcaccttcaaagtgggtaag
gctgaagacgtcatgcgcacctggcgcgaccagaagcttgctgcagatgtcctgatggtt
gacccaccacgtaagggtctggcacctgaattcaccgaggccgttggtagcatgctccca
gggcgcatcgtgtacgtctcatgcaacccagccacgcttgcacgcgatattaccgcgctc
ggcgagtttggctacaaggccacgcagacgcagcctgtggacatgttcccacagacccag
cacatcgaatccgtgacggtgctgacacgcgactaa
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