Lacticaseibacillus pabuli: PQ472_06320
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Entry
PQ472_06320 CDS
T09936
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lpab
Lacticaseibacillus pabuli
Brite
KEGG Orthology (KO) [BR:
lpab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpab03032
]
PQ472_06320 (topA)
03400 DNA repair and recombination proteins [BR:
lpab03400
]
PQ472_06320 (topA)
Enzymes [BR:
lpab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PQ472_06320 (topA)
DNA replication proteins [BR:
lpab03032
]
Prokaryotic type
DNA Topoisomerases
PQ472_06320 (topA)
DNA repair and recombination proteins [BR:
lpab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PQ472_06320 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
C1_2
CK_II_beta
Motif
Other DBs
NCBI-ProteinID:
WDF81550
LinkDB
All DBs
Position
complement(1344431..1346512)
Genome browser
AA seq
693 aa
AA seq
DB search
MPAKNLVIVESPAKAKTIEKYLGSNYKVVASLGHIRDLPKSQMGIDIDNHYEPRYISIRG
KGDVIKDLKKNAKKAQHIYLAADPDREGEAIAWHVNHILGLDEHEKNRVVFNEITKDAVK
NAFKTPRSIDMNLVDAQQARRILDRLVGYSISPLLWKKVKKGLSAGRVQSVALKLIIDRE
NEINAFEPQEYWSIDASFKKGRGKAFAGSFYGIDGKKHALPNNDAVVKVMDRVDKTKPFD
VTSVVKKERKRYPAPPFTTSSLQQEANRKLGFPARKTMMLAQQLYEGINLGGRQGTQGLI
TYMRTDSTRVSNVAKTETSQFIHEEYGEPYAAVKIRQGKLQEGAQDAHEAIRPTSTNRTP
AKMKEVLDRDQMRLYQLIWSRFVASEMTPAVMDTVAVKIEQNGVQFRANGSNTKFAGFTK
LYVSSRDNEGDDKELPALAEGDKLTMAKSDPAQHFTQPPARYSEANLVKALEENGVGRPS
TYAPTIETLKKRYYVKVTARRFEPTELGTIVNDLIVKFFPDIVDIKFTAKVESELDGIEN
GENDWVPVVDSFYKPFAKELASAEIGMAKVQLKDEPAGFNCDICGAPMVIKMGRYGKFYA
CSRFPDCRNTKAIVKEIGVICPKCHKGQIVERKSKRNRIFYGCDRYPDCDFVSWDKPIGR
DCPVDHHFLVEKKSKAGIQVVCPNGDYKEAIQK
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgccagccaagaacttggtcatcgtggaatcccctgccaaagcaaaaacaattgagaag
tatttggggtcaaactacaaggttgtagccagcctcggacacatccgtgatttgccaaag
agtcaaatgggaattgacatcgacaaccactacgaaccccgttacatttcgattcgtggt
aaaggcgatgtcattaaggatctgaaaaagaacgctaaaaaggcgcagcatatctacctc
gcagctgacccggaccgtgaaggggaagctattgcgtggcacgtcaaccatatcttaggg
ctcgacgaacacgaaaagaaccgggtcgtgttcaacgaaattacgaaggacgccgtcaag
aacgccttcaagaccccccgcagcatcgacatgaacctcgttgatgctcagcaggcgcgc
cggattctcgaccgtctcgtgggttactcaatcagtccgctgctctggaagaaggtcaaa
aagggcctgtctgccgggcgtgtgcaatccgttgcactgaagctgattattgaccgtgaa
aacgaaattaacgcgtttgaaccgcaagaatactggagcatcgatgccagctttaagaag
ggccgcggcaaagcatttgccgggagcttctatggcatcgacggtaaaaaacacgcgttg
cctaacaatgacgctgtcgtgaaggtcatggaccgggtcgacaagaccaagccatttgac
gtcaccagcgttgtcaaaaaggaacgcaagcgttacccagccccaccatttaccaccagt
tctctgcagcaggaagccaaccgtaagctcggtttcccagctcgtaagaccatgatgctc
gcccagcagctgtacgaagggattaacctcggcggccgccagggaacacaagggctcatt
acctatatgcgtaccgatagtacccgtgtttcgaatgttgccaagacggaaacgtcccag
tttatccacgaagaatacggcgagccatacgctgccgtgaagattcgtcagggcaagttg
caggaaggtgcgcaggatgcccatgaagccatccggccaacgtccaccaaccgcacgcct
gccaagatgaaggaagtcctcgaccgcgatcaaatgcgtttgtaccagctgatctggtcc
cgctttgtggctagtgaaatgacgcctgccgttatggatacggttgctgtgaagattgaa
cagaatggcgtgcagttccgtgccaatgggagcaacacgaagttcgccggctttaccaag
ctctacgtatcctctcgtgataacgaaggtgatgataaggagctgccagcactcgctgaa
ggtgacaagctgaccatggccaagtctgacccagcgcaacacttcacccagccacctgca
cggtactccgaagcgaacctggttaaggcgttggaagaaaacggtgtaggccgtccatct
acctacgcaccaaccatcgaaactttgaagaagcgctattacgtgaaggtcaccgcccgc
cgctttgaaccaaccgagctcgggacgattgtcaatgacctcatcgtgaagttcttcccc
gacatcgtggacattaagtttacggcgaaggttgaaagcgaactggatggcatcgaaaat
ggtgagaacgattgggtcccagtggtcgactcgttctacaagccgtttgccaaggaactc
gcatccgctgaaatcggtatggcgaaggtccaactgaaggacgaaccagccggcttcaac
tgcgatatttgtggggcgccgatggtcatcaagatgggccgttatggtaagttttacgcc
tgctcccgcttcccagactgccgcaataccaaggcgattgtgaaggaaatcggcgttatc
tgcccgaagtgccacaagggtcagattgttgaacgcaagagcaagcgcaaccggattttc
tacggttgtgatcgttaccctgactgtgactttgtctcttgggacaagccaatcggtcgc
gattgcccagtcgaccatcacttcctcgttgagaagaagagcaaggccggcatccaggtc
gtttgcccgaacggcgactacaaagaagcaattcaaaagtaa
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