Lacticaseibacillus pabuli: PQ472_06845
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Entry
PQ472_06845 CDS
T09936
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lpab
Lacticaseibacillus pabuli
Pathway
lpab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PQ472_06845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpab03400
]
PQ472_06845
Enzymes [BR:
lpab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PQ472_06845
DNA repair and recombination proteins [BR:
lpab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PQ472_06845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
AAA_22
UvrD-helicase
HHH_5
SLFN-g3_helicase
UvrD_C
AAA_16
AAA
nSTAND3
RecR_HhH
T2SSE
AAA_29
RsgA_GTPase
AAA_28
NPHP3_N
Zeta_toxin
AAA_23
NTPase_1
AAA_7
AAA_17
AAA_12
HHH
ABC_tran
Rad17
ATPase
AAA_14
DUF815
Mg_chelatase
AAA_18
Motif
Other DBs
NCBI-ProteinID:
WDF83830
LinkDB
All DBs
Position
complement(1459264..1461735)
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AA seq
823 aa
AA seq
DB search
MNDAESVTGKVESIFFSNPSNLFKILLIKIKATTLKWGEDEIVVKGSFGDITEGDSYSFT
GTLVDHPKYGKQFQAATYKSEQPTSRDGLVAYLASERFPGIGKKTAERIVDGLGLNAVDD
ILADPHVLDDCGVRGEKAATLVASLKENRGMEQVVIGLNGFGLSGNLAAKIYAQYREDSL
DIIKTNPYQLVEDIDGVGFRTADGIAQQLGFAKDAPQRLGGALSSVLNTAADSEGDTFVE
AKTAFGQVRSLLGDHAQQYTGDEAMLKVLQSQVADHKLVLEDGNIYTQTLYQAEWQIASQ
LSGLLDEGSAPDYGDERIDKTIHGVEKRLEIDYDETQLAAIHGALSHRIFLLTGGPGTGK
TTIINAVVQSYAELNQIDMDPNNYKSDEMFPIMLAAPTGRAAKRMTETTNLPASTIHRLL
GLGVDQTDYEARDLPDGLLIIDEMSMVDTYLMKILLNSVQPGMTVIFVGDKDQLPSVGPG
QVFADMLASGALPSVELTHIHRQDTDSTIVQLAHAINEGKLPADLLKKHADRSFIACPPA
QVPRAVMQVVSAAARREFDPLGVQVLAPMYRGDAGVDNLNPVVQNVFNPNDTGKRKEVDG
GQYKYRIGDKVLQLVNNPDKNVFNGEIGIVTGIDKDEKGKNDSLTITFDDNEISYPRSEW
GKITLAYATSIHKAQGSEFDMVILPLTMQSRRMLKRNLVYTAVTRAKQFLIMIGEPAAFE
LAVQTLAANRNTGLKKRLCSAFSIEEPAGDAEQQPAATPAVSQPAPVQVSEPVAEPATAA
VAPDTAGEEPADTILTEDMVIRGTIDPLIGMHGVKPADFEHKE
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgcggagagcgttactgggaaggtcgagagtatcttctttagtaaccccagc
aatttattcaaaatcctgctgattaagattaaggcgacgaccctgaagtggggcgaagac
gagattgtcgtgaagggcagttttggtgatatcacggaaggcgactcctacagtttcact
ggcacgttggtcgaccaccccaaatacggcaaacagtttcaggccgccacgtataagagt
gagcaaccaaccagtcgcgacgggttggtcgcttatttggcgtcagaacgattcccaggg
attggtaagaaaaccgccgagcgaatcgtggacggattgggcctgaatgccgtcgatgac
atactggctgacccccacgtgctggatgactgcggggtccgcggcgaaaaggcagcgacc
ctggtggcctccctcaaggaaaaccgggggatggagcaagtcgtgattgggttgaacggc
tttggcctgtccggtaacctggcggccaaaatctacgcgcaatatcgcgaggacagcctc
gacatcatcaaaacgaatccataccagctcgtggaggatatcgatggcgtcggttttcgt
accgcggatgggattgcacaacaacttggctttgctaaggatgcgccgcagcgtttaggt
ggcgcgttatcgagtgtcttgaatacggccgccgacagcgagggtgacacctttgttgaa
gcgaaaaccgcgtttgggcaggtgcggtcacttcttggcgaccacgcccagcaatatact
ggcgacgaagcgatgctgaaggtgttgcagtcgcaagtcgccgaccataaattggtgcta
gaagacggtaacatctacacccagacgttgtatcaagcggagtggcagattgccagtcaa
ctcagtggcttgctggacgaaggcagtgcaccggactatggcgatgaacggattgataaa
accatccacggcgtcgagaaacggctggaaattgactacgatgaaacgcagctagctgca
attcacggggctttgtcccaccgcatctttctcctgacgggtggccctgggacagggaaa
acaaccattattaatgcggtcgtacagtcctatgctgagttgaaccaaatcgacatggat
cctaacaattacaagtcggatgagatgtttcccatcatgcttgcggcgccaactggtcgt
gcggccaaacgcatgacggaaacaactaacttgcccgccagcacgattcaccgcctgctc
ggactgggcgttgaccaaacggactatgaggcccgcgacctaccagatggcctgctgatt
attgatgaaatgtcgatggtcgacacctacctgatgaagattctgctcaactcggtgcag
ccggggatgaccgtcattttcgttggggataaggaccaactgccatccgttgggcctggt
caagtcttcgcggacatgttggcgagtggcgcgctgccatccgttgagctgacgcatatt
caccgccaggacacggattccacgattgtccagttggcccacgcgattaacgagggcaag
ttgccggcagatttactgaagaaacacgcagaccgcagctttattgcttgtccgccagcg
caggtcccgcgggcggtgatgcaggtcgtttctgcggcggcgcggcgtgagtttgatccg
ctgggcgtgcaggtgctcgcacccatgtaccgtggtgacgctggcgtggataatctcaat
ccggttgtgcagaacgtgttcaacccgaacgatacgggcaagcgcaaagaggtcgatggc
gggcaatataagtaccgcatcggcgataaggttttgcagctggtgaacaatccggacaag
aatgttttcaacggagaaattgggattgtgaccgggattgataaggacgagaagggtaaa
aacgacagtctgaccatcacttttgatgacaatgaaattagctatccccgtagcgaatgg
ggtaaaattacgctagcatacgcaaccagcatccataaggcccaggggagcgagttcgac
atggtcattttgccgctcacaatgcagagccggcggatgttgaaacgaaatctggtctac
acggcggtaacgcgggccaaacagttcttgattatgattggtgaacccgccgcgtttgag
ctggcggtacagacactggccgctaaccggaatacggggctgaagaagcgcttgtgcagt
gcgttctcgattgaggaaccagctggggatgccgaacagcaacctgctgcgacacccgca
gtctcgcagccggcaccggtacaggttagcgaacctgttgcagaaccggcaaccgctgct
gttgcgcccgacactgccggcgaagagcccgcggacaccatcctgactgaggacatggtg
attcgcggtacgattgatccattaataggcatgcatggtgtgaaaccagccgattttgaa
cacaaagaataa
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