Lacticaseibacillus pabuli: PQ472_11350
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Entry
PQ472_11350 CDS
T09936
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lpab
Lacticaseibacillus pabuli
Pathway
lpab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PQ472_11350
09124 Replication and repair
03420 Nucleotide excision repair
PQ472_11350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpab03021
]
PQ472_11350
03036 Chromosome and associated proteins [BR:
lpab03036
]
PQ472_11350
03400 DNA repair and recombination proteins [BR:
lpab03400
]
PQ472_11350
Enzymes [BR:
lpab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PQ472_11350
Transcription machinery [BR:
lpab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PQ472_11350
Chromosome and associated proteins [BR:
lpab03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PQ472_11350
DNA repair and recombination proteins [BR:
lpab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PQ472_11350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
DEAD
ResIII
Helicase_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
WDF82473
LinkDB
All DBs
Position
2330235..2332604
Genome browser
AA seq
789 aa
AA seq
DB search
MLANRIGVRELVEFTVRTGDLNPANSPSANTAALGSRIHRQVQDAHDESGYESEVYLKTE
ETVAGQSYTIDGRADGVLTSDDGVLLEEIKTSARDFDKLPQNTRDRYWAQAKVYGHYLCD
QRDLPGLTIDLIYFDTREKKAEHHKIDCTAAELTDFYDHLLAQFAVWIQMRSDIITARNK
SAQALHFPFPKFRTGQHELAGAVYKTIYSNNRLFALAPTGTGKTISTLFPTIKAMGEGLI
NRAFYLTAKAATRTVAEDAMALMAGEGLMAKSITLTARDTIKFNDEPDEPSENPYMLGYY
DRLLPALQDMLANENQLTRSVIERYAQKHTLDPFEFSLDASLFCDVVICDYNYLFDPRVF
LQRFFAEDDSGNFFLIDEAHNLVDRARNMYSAAVDRESFVAINEDLKDEKGRQVNRLKKS
IRECIDCLDIIAGNLKGQEHFQKDQIEELRDVLDGFTSRFHDWLEMEPTPQSKFVVDTCL
DTFFLANAFLKIGEFYDDGFVTRIYRDDGKLFVKLLCLNPSPLLDASMKKGGGAVLFSAT
LSPMNYYRDMLGGVEDSMGYTLPSPFPPDNQRVIACANVDTTYRQRQNSLPTITACLTAM
VRAKNGNYMVFAPSYAYLDMVHQAFVRANPDLRVVAQESGMTASERTAFLDAFADGDPVT
GFAVLGGSFSEGIDLRGDALLGSAIVSVGLPGLSGETDQLRDYYQERSGQGFAYAYQLPG
FNNVLQAAGRVIRGERDVGVVLLLDRRFATRRYTELFPPQWSNYDVTRDTRGLATNLTTF
WQGHQTNEG
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcgaaccggattggcgtacgcgaactagttgaatttaccgtgcgcactggggat
ctcaatcccgcaaacagtcccagcgccaataccgccgcgctcggcagccgcattcaccgg
caagtccaggacgcacacgatgagtccggctatgaaagtgaagtctacctcaaaaccgaa
gaaaccgtggccggccagtcttacaccatcgatggtcgagcagatggcgtgctcacaagt
gatgacggtgtcttgctcgaggaaatcaagacctcggcgcgtgacttcgacaaattgcca
cagaatacacgtgaccgctactgggcccaggccaaggtatacggccactacttgtgtgat
cagcgcgacctgccagggttaacgattgacctcatttactttgatacgcgtgagaaaaag
gccgaacaccacaagattgattgcaccgcggcagaactgactgatttttacgaccaccta
ctcgcccaattcgcggtctggatccagatgcgcagcgacatcattaccgcgcgcaacaag
agcgcccaggcgctgcactttccctttccaaagttccgcaccggtcagcacgaactcgct
ggggccgtgtacaaaactatctatagtaataaccggctgtttgcactcgcgccaaccggt
accggtaaaacgatttcgaccctcttccccaccatcaaggcgatgggcgaaggcctgatt
aatcgcgccttttacctgactgctaaggccgcgacgcgcacagttgccgaggacgcgatg
gcactcatggccggtgaggggctgatggccaagagtatcactctgaccgcccgcgacacg
attaagtttaacgacgagccagatgaaccgagtgagaacccgtacatgctgggctactac
gaccggttgttgcccgcgttgcaggacatgctggcaaacgaaaaccagttgacccgcagt
gtgattgagcgctatgcccaaaagcacacgctggaccccttcgagttttccctcgacgcg
agtctattttgcgacgtcgttatctgcgactacaactacctctttgacccgcgcgtgttc
ttacagcgcttctttgccgaagatgattcgggcaacttctttctcatcgacgaagcgcac
aacctcgttgatcgtgcccggaatatgtacagtgccgcggtggaccgcgaatcctttgtc
gcaatcaatgaggacttaaaggatgaaaagggccgccaagtgaaccgtctaaaaaaatcg
attcgcgaatgcatcgactgcttggacattatcgccggtaacctcaagggtcaggaacac
tttcaaaaggaccagattgaagaactgcgcgacgtcttggatggcttcaccagccgcttc
cacgactggctcgaaatggagcccacaccgcaaagtaagtttgtcgtggacacctgcctc
gataccttctttttagccaacgcctttctcaagattggtgagttttacgacgacggtttt
gtcacccgcatttaccgcgatgatggcaagctctttgtgaaactgctctgcttgaacccc
agcccgctcctagatgccagcatgaagaagggcggcggcgcagtgctgttctccgcaacc
ctcagcccaatgaattactaccgggacatgctcggcggcgttgaagacagcatgggctat
accctcccttcaccgttcccaccggataaccaacgtgtcatcgcctgtgcgaatgtcgac
acgacttaccgtcagcgccaaaacagcctgccgaccatcacggcctgcttaaccgccatg
gtgcgcgccaagaacggcaactacatggtgttcgcacccagttacgcttacttggacatg
gtgcaccaggcctttgtacgtgcaaaccccgatttgcgtgttgttgcccaagaaagtggc
atgactgctagcgagcgcactgccttcttggatgcctttgcggatggcgaccccgtcacg
ggctttgccgtcctgggtgggtctttctcagaaggaattgatctacgtggcgatgcctta
ttgggtagcgccatcgtgtcagttggtctccctggcctatccggggaaacggatcagctg
cgcgactactatcaggaacggagcggccaaggctttgcttatgcctaccaactaccaggc
ttcaataatgtgttacaggcggccggtcgcgtcattcgcggcgaacgcgacgtcggcgtg
gtcctattactggatcgccgctttgccacgcggcgctacactgagctctttccaccgcaa
tggtcgaactatgacgtcacccgagatacacgcggtctcgcgaccaacctgacgaccttt
tggcaaggccaccagacaaatgaaggttaa
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