Lacticaseibacillus parahuelsenbergensis: LACPH_001235
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Entry
LACPH_001235 CDS
T10275
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lpah Lacticaseibacillus parahuelsenbergensis
Pathway
lpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACPH_001235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpah03019
]
LACPH_001235
Messenger RNA biogenesis [BR:
lpah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LACPH_001235
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
WLV79191
UniProt:
A0ABY9L627
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Position
1310689..1312371
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AA seq
560 aa
AA seq
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MTKINLVALGGVRENGKNMYAVEVDDQIFVCDFGLKYPDNELLGIDVVIPDFSYLTENAD
RIAGIFLSHGHADAVGALPYFLVDHPVPVFGSELTIAMAKVFMQHDSQAKKFKDFHVIDE
KSVIDFGDVSVSFFKTTHSIPGSLGIDIETSEGQIVYTGDFKFDPSATPMYQTDWSRLAQ
IGNKKVLALLSDSANAESPYPNANEHEIYDHIKETFEYQDGRIIVAGVASNIQRIQQVIN
AAASLGRRVVLTGRDVEKVVKTAIRLGYIKLPNDDILAKTKELKALAPEKTVILETGRMG
EPMKSLQRMATSRHRLIHIHDGDLVFITTTIAHAMETMAARTKDMIYRAGGDVKVLGDDI
HSSGHAYKNDLQLMIDLLKPEYLIPVQGEYRLLAAHAEIAHEAGIPLANIFIVGMGDILR
YEKGQMNASGHVNAGNTMIDGIGVGDIGNIVLRDRKMLAEDGIFIAVVTIDRKKKRVVST
PKVTSRGFVYLKTSRDLLAESGTLVTETVQKNLDNKEFDWTHLKQDVRDKLSRFLFEQTK
RRPVILPVIMEVNQNSAKRQ
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagatcaatctggtcgctcttggtggggtacgtgaaaacggaaaaaacatgtac
gccgtcgaagttgacgaccaaatttttgtatgcgattttggattgaaatatcctgataat
gagttactgggaattgatgttgtcattcccgattttagctacctaaccgaaaatgctgac
cgtattgccggtattttcctgagtcacgggcatgcagatgctgttggggcgctgccgtat
tttctggtagatcatccggttccggtttttggatcggaattgacgattgccatggccaaa
gtctttatgcagcatgacagtcaggccaagaaatttaaggattttcatgtcattgacgaa
aagtccgtgatcgattttggcgatgtgtctgtgtcgttctttaagactacgcatagtatt
ccgggttcattggggattgatattgaaaccagtgaaggtcagattgtctacactggggac
tttaagtttgaccctagtgctacgccgatgtatcaaacggactggtcgcggctggcacag
atcggcaataagaaggtcctggcgttgttgtcagactcagccaatgcggaatcgccttat
ccgaatgccaatgagcatgaaatatacgaccatatcaaagaaacatttgaatatcaggat
ggccggattattgtggcaggggttgccagcaacattcagcggattcagcaagtcattaat
gccgccgcatcactcggtcgccgggtcgtcttgaccggccgtgatgtcgaaaaggtggtt
aagacggccattcgcttaggctatatcaagctgcctaatgacgatattttggctaaaacc
aaggaattgaaggcattggcgccagaaaaaaccgtcattctcgaaaccggccggatgggc
gaaccaatgaagtcgctgcaacgaatggcaacatcacgccatcgcctcatccacattcat
gacggcgatctcgtcttcatcacgacaaccattgcccatgcgatggaaaccatggcagcg
cggacaaaagatatgatttatcgcgctggtggggacgttaaggttttgggcgatgatatt
cattcctccggccatgcctataagaatgatcttcaattgatgatcgacctgctgaagccg
gaatatctgataccggttcaaggtgagtatcggctgttggcggcgcatgcggaaatcgcg
cacgaagccggaatcccgctagcaaatatctttattgtcggcatgggcgacattttacgc
tatgaaaaaggccagatgaatgcttccggtcatgtcaatgccggtaacaccatgatcgat
ggcattggcgttggggacatcggtaatatcgtcctgcgcgatcgtaaaatgcttgccgaa
gatggcatctttattgccgtcgtcacgattgaccgcaagaaaaagcgggttgtttccacg
cctaaagtaaccagtcgtggattcgtttatctgaaaaccagccgtgacttacttgcggaa
agcggcactttggtcacagaaacggttcaaaagaatctcgataacaaggagtttgattgg
acccatcttaaacaggatgttcgcgataagctcagccgcttcttgtttgagcaaaccaag
cgccgtcccgtgattttgccggtgatcatggaagttaaccaaaatagtgccaagcgccaa
tag
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