Lacticaseibacillus parahuelsenbergensis: LACPH_002409
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Entry
LACPH_002409 CDS
T10275
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpah Lacticaseibacillus parahuelsenbergensis
Pathway
lpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACPH_002409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpah03019
]
LACPH_002409
03009 Ribosome biogenesis [BR:
lpah03009
]
LACPH_002409
Enzymes [BR:
lpah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LACPH_002409
Messenger RNA biogenesis [BR:
lpah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LACPH_002409
Ribosome biogenesis [BR:
lpah03009
]
Prokaryotic type
rRNA helicases
LACPH_002409
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
CMS1
DeaD_dimer
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WLV77639
UniProt:
A0ABY9L1S3
LinkDB
All DBs
Position
complement(2580834..2582342)
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AA seq
502 aa
AA seq
DB search
MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL
QHIDKADRSIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLADHP
QIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQTLLF
SATMPAAIMRLTNKFMKSPVVVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPD
LALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTIEDLTKK
RMLPMKPPTAEEALMGQISSGLSTIKEQVEANDTEKYEAMAETLLENYTPLQLVSAYLKA
VSPDDASAVPVKITPERPLPRRGRNNHGHGNRGGGYKGGYKGKRREGGYQGNRDGRRNYD
KKRNFGDKRKNVKRNFKIRSGE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactaggtttggatcatgatctcttaaaggcaatcgcacagtcaggt
tttgaagaagcgaccccgattcaagcagagacgatcccactggttctggaaggcaaagat
gtgatcggtcaagcacagaccggtaccgggaaaacggcagcatttggtttgccgattctg
caacacatcgataaagctgaccggagtatccaagcactggtcatttccccaacccgggaa
ttggcgattcagacccaagaagaactttatcgtttaggtcgcgacaagaagatcaaggtg
caagctgtttatggtggcgctgatattcgccgccagattcgtcagcttgctgaccacccg
caaatcgtggttggaaccccaggacggattcttgatcatatcgggcgtcataccttgaaa
ctggaacatcttgataccttggtattagatgaagccgatgaaatgctcgatatgggcttt
attgacgacattgaaaagattgttgaacagatgccaacagaacgtcagacgttgctgttt
tctgccaccatgccggcagcgatcatgcgcttgaccaacaagttcatgaagagcccggtt
gttgttaagattaaggccaaggaactgacggctgacaccgttgaacaatactatgttcgc
gcaaaagactatgaaaagttcgatgtaatgacgcgcttgttcgacgttcaggatcctgat
ctggcattgatttttggccggaccaaacgccgcgttgacgaattaacccgcggcttgaag
gcacgtgggtatcgcgctgaagggattcatggcgatttgacgcagcaaaagcgcatgagc
gtgttgcgccaattcaagagtggccaattggactttttggtggcgacggatgttgcggcg
cgtggattagacatttccggcgtgacgcatgtttataactatgacattccgcaagatcct
gattcatatgtgcatcgtatcggccggaccggtcgtgcagggcacaaaggggtttcggta
acatttgtcacaccgaatgaaattgaatacctgcacacgatcgaagacttgacgaagaag
cggatgttgccgatgaagccgcctaccgctgaagaagcgttgatgggccagatttccagc
ggcttatccacgatcaaagaacaagtcgaagccaacgacaccgaaaagtatgaagccatg
gcggaaacgcttttggaaaactataccccgctacaattggtttctgcctacctcaaagca
gtcagcccggatgatgccagtgcggttccggtcaaaattacaccagaacggccactgcca
cgtcgcggtcgcaacaatcatggtcacggtaatcgtggcggcggttataaaggcggttac
aaaggtaagcggcgcgaaggcggctatcaaggcaaccgtgacggccggcgcaactatgac
aagaagcgcaacttcggcgacaaacgtaagaatgtcaaacgtaacttcaaaattcgttca
ggcgaataa
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